Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E5Q06_RS12085 Genome accession   NZ_CP038979
Coordinates   2384942..2385409 (-) Length   155 a.a.
NCBI ID   WP_027480069.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379942..2390409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q06_RS12060 - 2380753..2381622 (-) 870 WP_162177714.1 hypothetical protein -
  E5Q06_RS12065 paaD 2381721..2382227 (-) 507 WP_051618854.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD -
  E5Q06_RS12070 paaC 2382227..2383018 (-) 792 WP_010889010.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC -
  E5Q06_RS12075 - 2383015..2383677 (-) 663 WP_051618855.1 phenylacetic acid degradation protein -
  E5Q06_RS12080 paaA 2383815..2384792 (-) 978 WP_010889012.1 1,2-phenylacetyl-CoA epoxidase subunit PaaA -
  E5Q06_RS12085 luxS 2384942..2385409 (-) 468 WP_027480069.1 S-ribosylhomocysteine lyase Regulator
  E5Q06_RS12090 lspA 2385418..2385993 (+) 576 WP_010889014.1 signal peptidase II -
  E5Q06_RS12095 - 2386070..2386339 (-) 270 WP_027480068.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  E5Q06_RS12100 thrB 2386738..2387661 (+) 924 WP_010889016.1 homoserine kinase -
  E5Q06_RS12105 - 2387712..2388923 (-) 1212 WP_010889017.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17051.35 Da        Isoelectric Point: 5.2233

>NTDB_id=316529 E5Q06_RS12085 WP_027480069.1 2384942..2385409(-) (luxS) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
MANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMGCR
TGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLER

Nucleotide


Download         Length: 468 bp        

>NTDB_id=316529 E5Q06_RS12085 WP_027480069.1 2384942..2385409(-) (luxS) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
ATGGCAAACGTCGAATCGTTCGATCTGGACCACACCAAGGTCAAGGCTCCCTATGTCCGCCTCGCCGGGGTCAAGACCAC
CCCGAAGGGTGACCAGATCTCCAAGTACGACCTGCGCTTCTTGCAGCCCAACCAGGGCGCCATCGACCCCGCCGCCATTC
ACACGCTCGAGCACCTGCTGGCGGGCTACATGCGCGACCACCTCGAGGGCGTGGTGGACGTGTCCCCGATGGGCTGCCGC
ACCGGCATGTACATGGCCGTCATCGGTGAACCCGACGAGCAGGGCGTGATGAAAGCCTTCGAGGCGGCCCTCAAGGACAC
CGCCGGGCACGACCAACCCATTCCCGGCGTGAGCGAACTCGAATGCGGCAACTACCGCGACCACGACCTCGCCGCCGCCC
GCCAGCACGCCCGCGACGTGCTCGACCAGGGGCTGAAAGTTCAGGAAACCATTCTGCTCGAACGCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

45.455

99.355

0.452

Multiple sequence alignment