Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D5H27_RS04895 Genome accession   NZ_CP032506
Coordinates   924197..924661 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain JT3-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 919197..929661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5H27_RS04875 (D5H27_04820) - 919678..921498 (+) 1821 WP_032874722.1 PAS domain-containing protein -
  D5H27_RS04880 (D5H27_04825) - 921523..922692 (-) 1170 WP_032874724.1 aminotransferase A -
  D5H27_RS19750 (D5H27_04830) - 922893..923054 (-) 162 WP_007409608.1 hypothetical protein -
  D5H27_RS04890 (D5H27_04835) cheV 923243..924154 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  D5H27_RS04895 (D5H27_04840) kre 924197..924661 (-) 465 WP_003154622.1 YkyB family protein Regulator
  D5H27_RS04900 (D5H27_04845) - 924784..926076 (-) 1293 WP_007611093.1 MFS transporter -
  D5H27_RS04905 (D5H27_04850) - 926152..926646 (-) 495 WP_087920795.1 L,D-transpeptidase family protein -
  D5H27_RS04910 (D5H27_04855) - 926721..927584 (-) 864 WP_032874726.1 metallophosphoesterase -
  D5H27_RS04915 (D5H27_04860) fadH 927728..928492 (+) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  D5H27_RS04920 (D5H27_04865) - 928606..929154 (+) 549 WP_032874729.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=316510 D5H27_RS04895 WP_003154622.1 924197..924661(-) (kre) [Bacillus velezensis strain JT3-1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=316510 D5H27_RS04895 WP_003154622.1 924197..924661(-) (kre) [Bacillus velezensis strain JT3-1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment