Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E5Q06_RS05620 Genome accession   NZ_CP038979
Coordinates   1114600..1115943 (+) Length   447 a.a.
NCBI ID   WP_027479626.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1109600..1120943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q06_RS05600 - 1109697..1110473 (+) 777 WP_010887744.1 class I SAM-dependent methyltransferase -
  E5Q06_RS05605 - 1110528..1111505 (+) 978 WP_010887745.1 cation diffusion facilitator family transporter -
  E5Q06_RS05610 - 1111552..1113639 (+) 2088 WP_027479627.1 ABC-F family ATP-binding cassette domain-containing protein -
  E5Q06_RS05615 - 1114054..1114341 (+) 288 WP_010887747.1 DUF2087 domain-containing protein -
  E5Q06_RS05620 radA 1114600..1115943 (+) 1344 WP_027479626.1 DNA repair protein RadA Machinery gene
  E5Q06_RS05625 - 1116066..1117316 (-) 1251 WP_010887749.1 dihydroorotase -
  E5Q06_RS05630 - 1117335..1117877 (-) 543 WP_010887750.1 hypothetical protein -
  E5Q06_RS05635 - 1117954..1118418 (-) 465 WP_010887751.1 DUF3995 domain-containing protein -
  E5Q06_RS05640 - 1118419..1119363 (-) 945 WP_010887752.1 aspartate carbamoyltransferase catalytic subunit -
  E5Q06_RS05645 pyrR 1119360..1119911 (-) 552 WP_010887753.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  E5Q06_RS05650 - 1120207..1120620 (-) 414 WP_010887754.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 46629.57 Da        Isoelectric Point: 8.0244

>NTDB_id=316501 E5Q06_RS05620 WP_027479626.1 1114600..1115943(+) (radA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
MPKVKTNYICNSCGYQSAKPLGRCPNCQAWNSFEEEVPTASTSGKSGRGGLGGYGGVKGGKLTPLSTVGRREEPRTPSGI
PELDRVLGGGLVAGGVTLIGGEPGIGKSTLLLQVADKVASRGGTVLYVAGEESLEQIRLRADRLGVAADLQMTRDTRAEH
IAALLEEHKPALCIVDSIQTVTVEGEGAPGGVAQVRDGTAMLTRAAKETGTATVLVGHVTKDGTVAGPKVMEHIVDTTVF
LETVGAFRLLRSVKNRFGQAGELGVFEMRGEGLIAVDNPSAAFLAERPLDVPGSVVAATVDGQRPMLLEVQALASKTPYP
NARRVVVGLDPRRVDVVLAVLERRLDLTLGGLDVYVNLAGGLKVPDPGLDLAVALAVYSAVVGRALPQNVAVFGEVGLAG
EVRSTQMALRRAEEAGRAGYKRLVVPPGLDGQAGVKSVEEAVKAVWR

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=316501 E5Q06_RS05620 WP_027479626.1 1114600..1115943(+) (radA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
GTGCCCAAAGTCAAGACCAATTACATCTGCAATTCCTGCGGCTACCAGTCGGCCAAACCGCTCGGGCGCTGCCCCAACTG
CCAGGCCTGGAACTCGTTCGAGGAAGAAGTGCCCACCGCCTCCACCTCCGGTAAGAGCGGGCGCGGGGGCCTCGGCGGCT
ACGGTGGCGTCAAGGGCGGCAAGCTCACGCCTCTTTCCACCGTCGGACGGCGCGAGGAACCCCGCACGCCGTCGGGCATT
CCCGAACTCGACCGCGTGCTTGGCGGCGGGCTGGTGGCGGGCGGCGTGACCCTCATCGGCGGCGAACCCGGCATCGGCAA
AAGCACGCTGCTGTTGCAAGTGGCCGATAAAGTGGCCTCGCGCGGCGGCACTGTGCTCTACGTTGCGGGCGAGGAATCGC
TGGAACAAATTCGCCTGCGCGCCGACCGACTGGGCGTCGCCGCCGACCTGCAAATGACCCGCGACACCCGCGCCGAGCAC
ATTGCCGCGCTGCTCGAAGAACACAAACCCGCGCTGTGCATCGTGGACTCCATCCAGACGGTGACGGTGGAAGGCGAAGG
CGCCCCCGGCGGCGTGGCGCAGGTCCGCGACGGCACCGCCATGCTCACGCGGGCGGCGAAGGAAACCGGCACCGCGACAG
TGCTCGTCGGCCACGTCACCAAAGACGGCACGGTGGCGGGGCCGAAGGTCATGGAACACATCGTGGACACCACCGTCTTT
CTGGAAACGGTGGGCGCGTTCCGCCTCCTACGCAGCGTGAAAAACCGCTTCGGGCAGGCGGGCGAACTCGGCGTCTTCGA
GATGCGTGGCGAAGGCCTGATTGCGGTGGACAACCCCTCGGCGGCCTTCCTCGCCGAGCGGCCTCTAGATGTGCCCGGCA
GCGTCGTCGCCGCCACGGTGGACGGCCAGCGCCCGATGCTGCTGGAAGTGCAGGCCCTCGCCTCCAAGACGCCTTACCCC
AACGCCCGGCGCGTGGTCGTCGGCCTCGACCCCCGGCGCGTGGACGTGGTGCTGGCGGTGCTGGAGCGGCGGCTGGACCT
GACTCTCGGCGGGCTGGACGTGTACGTCAACCTTGCGGGTGGCCTCAAGGTGCCCGACCCCGGCCTCGACCTCGCAGTGG
CGCTCGCCGTCTACTCGGCGGTGGTGGGCCGCGCCCTGCCGCAGAACGTGGCGGTCTTCGGCGAAGTCGGCCTCGCGGGT
GAAGTCCGCTCCACCCAGATGGCCCTGCGCCGCGCCGAGGAAGCGGGCCGCGCCGGGTACAAGCGCCTCGTCGTCCCGCC
GGGCCTTGACGGACAAGCGGGCGTGAAGAGTGTAGAAGAAGCCGTGAAAGCCGTTTGGCGCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.573

100

0.447
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.619

99.776

0.445
  radA Streptococcus mitis NCTC 12261

43.355

100

0.445
  radA Streptococcus pneumoniae TIGR4

42.919

100

0.441
  radA Streptococcus pneumoniae D39

42.919

100

0.441
  radA Streptococcus pneumoniae Rx1

42.919

100

0.441
  radA Streptococcus pneumoniae R6

42.919

100

0.441

Multiple sequence alignment