Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO103_RS24055 Genome accession   NC_013353
Coordinates   4668181..4668849 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli O103:H2 str. 12009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4663181..4673849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO103_RS24025 (ECO103_4538) yicC 4663200..4664063 (-) 864 WP_000621337.1 YicC/YloC family endoribonuclease -
  ECO103_RS24030 (ECO103_4539) rph 4664190..4664906 (+) 717 WP_001247093.1 ribonuclease PH -
  ECO103_RS24035 (ECO103_4540) pyrE 4664972..4665613 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  ECO103_RS24040 (ECO103_4541) slmA 4665650..4666246 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ECO103_RS24045 (ECO103_4542) dut 4666353..4666811 (-) 459 WP_000976074.1 dUTP diphosphatase -
  ECO103_RS24050 (ECO103_4543) coaBC 4666789..4668009 (-) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECO103_RS24055 (ECO103_4544) radC 4668181..4668849 (+) 669 WP_001298959.1 RadC family protein Machinery gene
  ECO103_RS24060 (ECO103_4545) rpmB 4669066..4669302 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECO103_RS24065 (ECO103_4546) rpmG 4669323..4669490 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECO103_RS24070 (ECO103_4547) mutM 4669588..4670397 (+) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECO103_RS24075 (ECO103_4548) coaD 4670436..4670915 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ECO103_RS24080 (ECO103_4549) waaA 4670923..4672200 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECO103_RS24085 (ECO103_4550) rfaQ 4672613..4673671 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=31643 ECO103_RS24055 WP_001298959.1 4668181..4668849(+) (radC) [Escherichia coli O103:H2 str. 12009]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=31643 ECO103_RS24055 WP_001298959.1 4668181..4668849(+) (radC) [Escherichia coli O103:H2 str. 12009]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment