Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | E5L67_RS08000 | Genome accession | NZ_CP038868 |
| Coordinates | 1541823..1542128 (-) | Length | 101 a.a. |
| NCBI ID | WP_002790525.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain 16SHKX65C | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1536823..1547128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5L67_RS07965 | - | 1537238..1537999 (+) | 762 | WP_072212081.1 | ATP-binding protein | - |
| E5L67_RS07970 | - | 1537996..1538679 (+) | 684 | WP_060785324.1 | 3-methyladenine DNA glycosylase | - |
| E5L67_RS07975 | thiD | 1538679..1539491 (+) | 813 | WP_002822374.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| E5L67_RS07980 | thiE | 1539481..1540113 (+) | 633 | WP_162284675.1 | thiamine phosphate synthase | - |
| E5L67_RS07985 | - | 1540091..1540720 (+) | 630 | WP_002783358.1 | uroporphyrinogen-III synthase | - |
| E5L67_RS07990 | - | 1540713..1541165 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| E5L67_RS07995 | - | 1541162..1541830 (-) | 669 | WP_002790524.1 | hypothetical protein | - |
| E5L67_RS08000 | ctsT | 1541823..1542128 (-) | 306 | WP_002790525.1 | hypothetical protein | Machinery gene |
| E5L67_RS08005 | proC | 1542125..1542862 (-) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| E5L67_RS08010 | fliW | 1542862..1543251 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| E5L67_RS08015 | - | 1543416..1544063 (+) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| E5L67_RS08020 | lon | 1544079..1546454 (+) | 2376 | WP_162284676.1 | endopeptidase La | - |
| E5L67_RS08025 | rpsR | 1546510..1546770 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12410.27 Da Isoelectric Point: 6.0617
>NTDB_id=316422 E5L67_RS08000 WP_002790525.1 1541823..1542128(-) (ctsT) [Campylobacter coli strain 16SHKX65C]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=316422 E5L67_RS08000 WP_002790525.1 1541823..1542128(-) (ctsT) [Campylobacter coli strain 16SHKX65C]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
48.98 |
97.03 |
0.475 |