Detailed information NTG0316419

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: E5L67_RS07635
• Genome accession: NZ_CP038868
• Coordinates: 1464773..1465717 (-)
• Length: 314 a.a.
• NCBI ID: WP_162284669.1
• Uniprot ID: -
• Organism: Campylobacter coli strain 16SHKX65C
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1459773..1470717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5L67_RS07600	-	1459964..1460164 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
E5L67_RS07605	-	1460194..1460493 (-)	300	WP_002777238.1	cytochrome c	-
E5L67_RS07610	-	1460570..1461133 (+)	564	WP_002820231.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
E5L67_RS07615	rfaD	1461130..1462083 (+)	954	WP_002831601.1	ADP-glyceromanno-heptose 6-epimerase	-
E5L67_RS07620	rfaE1	1462076..1463461 (+)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
E5L67_RS07625	gmhA	1463458..1464018 (+)	561	WP_052778106.1	D-sedoheptulose 7-phosphate isomerase	-
E5L67_RS07630	-	1464018..1464780 (+)	763	Protein_1480	glycosyltransferase family 25 protein	-
E5L67_RS07635	waaF	1464773..1465717 (-)	945	WP_162284669.1	lipopolysaccharide heptosyltransferase II	Regulator
E5L67_RS07640	-	1465777..1466598 (+)	822	WP_002844798.1	glycosyltransferase family 2 protein	-
E5L67_RS07645	-	1466641..1468008 (+)	1368	WP_002844799.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
E5L67_RS07650	gmd	1468009..1469148 (+)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
E5L67_RS07655	-	1469141..1470079 (+)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36040.60 Da
• Isoelectric Point: 10.3664

>NTDB_id=316419 E5L67_RS07635 WP_162284669.1 1464773..1465717(-) (waaF) [Campylobacter coli strain 16SHKX65C]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide

• Length: 945 bp

>NTDB_id=316419 E5L67_RS07635 WP_162284669.1 1464773..1465717(-) (waaF) [Campylobacter coli strain 16SHKX65C]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (108-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	83.067	99.682	0.828