Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   E5L67_RS07345 Genome accession   NZ_CP038868
Coordinates   1408649..1409515 (+) Length   288 a.a.
NCBI ID   WP_131235448.1    Uniprot ID   -
Organism   Campylobacter coli strain 16SHKX65C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403649..1414515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS07320 - 1404084..1405343 (-) 1260 WP_002777385.1 ComEC/Rec2 family competence protein -
  E5L67_RS07325 - 1405343..1405900 (-) 558 WP_002788123.1 DedA family protein -
  E5L67_RS07330 rny 1405911..1407464 (-) 1554 WP_002784377.1 ribonuclease Y -
  E5L67_RS07335 - 1407385..1408011 (-) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  E5L67_RS07340 - 1408092..1408649 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  E5L67_RS07345 pilA 1408649..1409515 (+) 867 WP_131235448.1 signal recognition particle-docking protein FtsY Machinery gene
  E5L67_RS07350 - 1409512..1410456 (-) 945 WP_002777375.1 GTP-binding protein -
  E5L67_RS07355 - 1410449..1410784 (-) 336 WP_002777373.1 hypothetical protein -
  E5L67_RS07360 - 1410826..1411707 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  E5L67_RS07365 - 1411710..1412561 (-) 852 WP_002784379.1 carbon-nitrogen hydrolase family protein -
  E5L67_RS07370 radA/sms 1412697..1414037 (+) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31846.88 Da        Isoelectric Point: 5.1228

>NTDB_id=316415 E5L67_RS07345 WP_131235448.1 1408649..1409515(+) (pilA) [Campylobacter coli strain 16SHKX65C]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNTGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=316415 E5L67_RS07345 WP_131235448.1 1408649..1409515(+) (pilA) [Campylobacter coli strain 16SHKX65C]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGCACTCAAG
GCAATACCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444