Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D6B99_RS01630 Genome accession   NZ_CP032489
Coordinates   350121..351497 (-) Length   458 a.a.
NCBI ID   WP_119984448.1    Uniprot ID   A0A386HLD2
Organism   Arachidicoccus soli strain KIS59-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 345121..356497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6B99_RS01615 (D6B99_01615) - 345207..347456 (-) 2250 WP_240377615.1 GH92 family glycosyl hydrolase -
  D6B99_RS01620 (D6B99_01620) - 347541..348518 (-) 978 WP_119984443.1 ROK family protein -
  D6B99_RS01625 (D6B99_01625) - 348582..350042 (-) 1461 WP_119984446.1 MFS transporter -
  D6B99_RS01630 (D6B99_01630) radA 350121..351497 (-) 1377 WP_119984448.1 DNA repair protein RadA Machinery gene
  D6B99_RS01635 (D6B99_01635) - 351541..352569 (-) 1029 WP_119984450.1 N-acetylmuramoyl-L-alanine amidase -
  D6B99_RS01640 (D6B99_01640) - 352591..353445 (-) 855 WP_119984452.1 MBL fold metallo-hydrolase -
  D6B99_RS01645 (D6B99_01645) - 353490..354809 (-) 1320 WP_119984454.1 (Fe-S)-binding protein -
  D6B99_RS01650 (D6B99_01650) - 355005..355502 (+) 498 WP_119990787.1 phosphoribosyltransferase family protein -
  D6B99_RS17785 - 355541..355879 (+) 339 WP_262692066.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50789.27 Da        Isoelectric Point: 5.5910

>NTDB_id=316395 D6B99_RS01630 WP_119984448.1 350121..351497(-) (radA) [Arachidicoccus soli strain KIS59-12]
MPKTKTAFFCNNCGYESAKWLGKCPACSEWNTFVEEVIDRGTDTTSTWKNYHNTVNAKDAKILSLGEINTTEEERIFTKD
LEINRVLGGGIVPGSIVLVAGEPGIGKSTLFLQTALQIDKIVTLYISGEESAQQIKMRADRLNIQNENFYLLTETVTQTI
FKEIKKLRPNLVIVDSVQTLHSEVIDASPGSVSQIRECAAEFQRFAKETNTPVFLIGHITKDGNIAGPKILEHMVDTVLQ
FEGDRHYAYRILRTLKNRFGSTAELGIYEMNSQGMRAVNNPSEILITQKEDYLSGSAIAASMEGMRPLLIEVQALVTQSV
YGTPQRTNSGFDLRRLQLLLAVLEKRGGFLFGMKDVFVNIAGGLKVEDPSIDLAVISALLSSYEDVPLPQQICFAGEVGL
NGEIRAVNRIEQRIAEAEKLGFEKIIVSKYNKKGLNAKSANIEVVALGKVEELYSYLF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=316395 D6B99_RS01630 WP_119984448.1 350121..351497(-) (radA) [Arachidicoccus soli strain KIS59-12]
ATGCCCAAGACAAAAACAGCTTTTTTTTGTAATAATTGTGGTTATGAATCCGCCAAATGGTTGGGCAAATGCCCTGCTTG
TAGCGAATGGAATACTTTTGTTGAAGAAGTGATTGATAGAGGAACGGATACTACTTCCACCTGGAAGAATTATCATAATA
CAGTCAATGCGAAAGATGCAAAAATTCTTTCTCTTGGCGAAATTAATACAACAGAAGAAGAGAGAATATTTACCAAAGAT
TTGGAAATAAATCGTGTATTGGGGGGAGGGATTGTGCCTGGTAGTATTGTATTAGTCGCAGGTGAGCCGGGAATTGGAAA
GAGTACATTGTTCTTACAAACAGCTTTACAGATCGATAAAATAGTAACCCTTTATATAAGTGGTGAAGAGAGTGCACAAC
AAATAAAAATGCGTGCCGATCGTTTAAACATACAAAATGAAAATTTTTATTTACTTACCGAAACGGTTACACAAACTATT
TTTAAGGAAATAAAAAAACTAAGACCGAATTTAGTCATTGTCGATAGTGTACAAACTTTACATTCAGAAGTAATAGATGC
TTCCCCCGGAAGTGTATCACAGATACGTGAATGTGCCGCAGAATTTCAACGCTTCGCTAAAGAAACCAACACCCCTGTTT
TTTTAATTGGTCATATCACAAAAGACGGCAATATTGCAGGACCAAAGATTTTAGAACATATGGTAGACACTGTTTTACAA
TTTGAAGGAGATCGCCATTATGCTTATAGAATTTTACGAACATTGAAAAATCGTTTTGGCAGCACAGCCGAATTAGGTAT
TTATGAAATGAACAGTCAGGGCATGCGTGCTGTAAATAACCCTTCAGAAATTCTAATAACCCAAAAAGAAGATTATCTAA
GTGGCAGTGCGATCGCAGCTAGCATGGAAGGAATGCGCCCACTATTAATTGAAGTGCAGGCCTTAGTTACTCAAAGTGTT
TATGGTACACCACAGCGAACCAATAGCGGTTTTGACCTGCGAAGGTTACAATTACTGTTAGCTGTATTGGAAAAACGTGG
AGGCTTTTTATTTGGGATGAAGGATGTTTTTGTAAATATTGCCGGCGGGTTGAAAGTAGAAGACCCTTCCATTGACTTGG
CAGTTATCTCTGCTTTACTTTCTTCTTATGAAGATGTGCCTTTACCACAGCAGATATGTTTTGCCGGTGAGGTGGGGTTG
AATGGTGAAATACGTGCAGTGAATAGGATTGAACAACGTATCGCCGAAGCAGAAAAGTTAGGTTTTGAGAAAATTATTGT
ATCTAAATATAATAAAAAAGGATTGAATGCTAAATCAGCAAATATTGAAGTAGTCGCCTTAGGTAAAGTCGAAGAGTTAT
ATAGCTATCTTTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(74-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A386HLD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.78

99.127

0.493
  radA Streptococcus mitis NCTC 12261

49.02

100

0.491
  radA Streptococcus mitis SK321

49.02

100

0.491
  radA Streptococcus pneumoniae Rx1

49.02

100

0.491
  radA Streptococcus pneumoniae D39

49.02

100

0.491
  radA Streptococcus pneumoniae R6

49.02

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.02

100

0.491

Multiple sequence alignment