Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   E5L67_RS01330 Genome accession   NZ_CP038868
Coordinates   256639..257019 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain 16SHKX65C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 251639..262019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS01305 aspS 252152..253903 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  E5L67_RS01310 - 253900..254475 (+) 576 WP_002776379.1 adenylate kinase -
  E5L67_RS01315 ppa 254485..255003 (+) 519 WP_002776378.1 inorganic diphosphatase -
  E5L67_RS01320 msrA 255051..255551 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  E5L67_RS01325 - 255774..256628 (-) 855 WP_370658880.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  E5L67_RS01330 dprB 256639..257019 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  E5L67_RS01335 dprA 257016..257786 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  E5L67_RS01340 - 257776..258828 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  E5L67_RS01345 ilvC 258831..259853 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  E5L67_RS01350 - 259976..261910 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=316384 E5L67_RS01330 WP_002776373.1 256639..257019(-) (dprB) [Campylobacter coli strain 16SHKX65C]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=316384 E5L67_RS01330 WP_002776373.1 256639..257019(-) (dprB) [Campylobacter coli strain 16SHKX65C]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421