Detailed information NTG0316339

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A7A13_RS14450
• Genome accession: NZ_CP038859
• Coordinates: 2986300..2987292 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 357900
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2981300..2992292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7A13_RS14425 (A7A13_14640)	ygbN	2981955..2983319 (+)	1365	WP_000104439.1	GntP family transporter	-
A7A13_RS14430 (A7A13_14645)	-	2983358..2983594 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A7A13_RS14435 (A7A13_14650)	-	2983605..2985032 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A7A13_RS14440 (A7A13_14655)	-	2985032..2985625 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A7A13_RS14445 (A7A13_14660)	-	2985772..2986179 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
A7A13_RS14450 (A7A13_14665)	rpoS	2986300..2987292 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A7A13_RS14455 (A7A13_14670)	nlpD	2987355..2988449 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
A7A13_RS14460 (A7A13_14675)	pcm	2988634..2989260 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A7A13_RS14465 (A7A13_14680)	surE	2989254..2990015 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A7A13_RS14470 (A7A13_14685)	truD	2989996..2991045 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
A7A13_RS14475 (A7A13_14690)	ispF	2991042..2991521 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A7A13_RS14480 (A7A13_14695)	ispD	2991521..2992231 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=316339 A7A13_RS14450 WP_000081550.1 2986300..2987292(-) (rpoS) [Escherichia coli strain 357900]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=316339 A7A13_RS14450 WP_000081550.1 2986300..2987292(-) (rpoS) [Escherichia coli strain 357900]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715