Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4H51_RS05800 Genome accession   NZ_CP032480
Coordinates   1185527..1185931 (-) Length   134 a.a.
NCBI ID   WP_139544311.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-C-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1180527..1190931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H51_RS05775 recJ 1181456..1183006 (+) 1551 WP_139544306.1 single-stranded-DNA-specific exonuclease RecJ -
  D4H51_RS05780 - 1183006..1183887 (+) 882 WP_139544307.1 RluA family pseudouridine synthase -
  D4H51_RS05785 - 1184015..1184575 (-) 561 WP_139544308.1 hypothetical protein -
  D4H51_RS05790 - 1184559..1184864 (-) 306 WP_139544309.1 hypothetical protein -
  D4H51_RS05795 - 1185051..1185401 (-) 351 WP_139544310.1 tetratricopeptide repeat protein -
  D4H51_RS05800 dprB 1185527..1185931 (-) 405 WP_139544311.1 Holliday junction resolvase RuvX Machinery gene
  D4H51_RS05805 dprA 1185928..1186728 (-) 801 WP_139544312.1 DNA-processing protein DprA Machinery gene
  D4H51_RS05810 minE 1186735..1186968 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4H51_RS05815 minD 1186965..1187771 (-) 807 WP_139544313.1 septum site-determining protein MinD -
  D4H51_RS05820 ilvC 1187795..1188787 (-) 993 WP_139544314.1 ketol-acid reductoisomerase -
  D4H51_RS05830 - 1189036..1189818 (+) 783 WP_139544315.1 NAD+ synthase -
  D4H51_RS05835 - 1189815..1190753 (+) 939 WP_139544316.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15232.72 Da        Isoelectric Point: 9.1637

>NTDB_id=316311 D4H51_RS05800 WP_139544311.1 1185527..1185931(-) (dprB) [Helicobacter pylori strain 19-C-EK1]
MILACDVGLKRIGIAALLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGKKNKRIAIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316311 D4H51_RS05800 WP_139544311.1 1185527..1185931(-) (dprB) [Helicobacter pylori strain 19-C-EK1]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGACAATTTAGAGCATTTGGGCAAGAAAAATAAGAGGAT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment