Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4I21_RS05280 Genome accession   NZ_CP032479
Coordinates   1068781..1069185 (-) Length   134 a.a.
NCBI ID   WP_139543224.1    Uniprot ID   -
Organism   Helicobacter pylori strain 21-F-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063781..1074185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I21_RS05255 recJ 1064243..1065793 (+) 1551 WP_139543220.1 single-stranded-DNA-specific exonuclease RecJ -
  D4I21_RS05260 - 1065793..1066674 (+) 882 WP_139543221.1 RluA family pseudouridine synthase -
  D4I21_RS05265 - 1066788..1067348 (-) 561 WP_139543222.1 hypothetical protein -
  D4I21_RS05270 - 1067332..1067670 (-) 339 WP_000699881.1 hypothetical protein -
  D4I21_RS05275 - 1067795..1068649 (-) 855 WP_139543223.1 tetratricopeptide repeat protein -
  D4I21_RS05280 dprB 1068781..1069185 (-) 405 WP_139543224.1 Holliday junction resolvase RuvX Machinery gene
  D4I21_RS05285 dprA 1069182..1069982 (-) 801 WP_139543225.1 DNA-processing protein DprA Machinery gene
  D4I21_RS05290 minE 1069989..1070222 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4I21_RS05295 minD 1070219..1071025 (-) 807 WP_001019047.1 septum site-determining protein MinD -
  D4I21_RS05300 ilvC 1071044..1072036 (-) 993 WP_139543226.1 ketol-acid reductoisomerase -
  D4I21_RS05310 - 1072285..1073067 (+) 783 WP_139543227.1 NAD+ synthase -
  D4I21_RS05315 - 1073064..1074002 (+) 939 WP_139543228.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15279.67 Da        Isoelectric Point: 8.4898

>NTDB_id=316290 D4I21_RS05280 WP_139543224.1 1068781..1069185(-) (dprB) [Helicobacter pylori strain 21-F-EK1]
MILACDVGLKRIGIAALLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPDESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316290 D4I21_RS05280 WP_139543224.1 1068781..1069185(-) (dprB) [Helicobacter pylori strain 21-F-EK1]
GTGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTGTCTTGCCCTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCGATGAAAGCTATGCGGATACGAACGCGCGCATTGAACATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCCATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTATCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.015

100

0.97

Multiple sequence alignment