Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4J00_RS07090 Genome accession   NZ_CP032478
Coordinates   1446165..1446428 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK9     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441165..1451428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J00_RS07075 - 1442158..1443498 (-) 1341 WP_201736749.1 COG3014 family protein -
  D4J00_RS07085 comB4 1443800..1446163 (-) 2364 WP_139519886.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4J00_RS07090 comB3 1446165..1446428 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4J00_RS07095 comB2 1446428..1446709 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4J00_RS07100 - 1446855..1447682 (-) 828 WP_139519888.1 DUF5718 family protein -
  D4J00_RS07105 - 1447771..1448823 (-) 1053 WP_139519889.1 MnmA/TRMU family protein -
  D4J00_RS07110 dnaG 1448820..1450499 (-) 1680 WP_139519891.1 DNA primase -
  D4J00_RS07120 groES 1450787..1451143 (+) 357 WP_000671920.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=316282 D4J00_RS07090 WP_000584956.1 1446165..1446428(-) (comB3) [Helicobacter pylori strain 25-A-EK9]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=316282 D4J00_RS07090 WP_000584956.1 1446165..1446428(-) (comB3) [Helicobacter pylori strain 25-A-EK9]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment