Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E5285_RS20125 Genome accession   NZ_CP038857
Coordinates   4129449..4129991 (-) Length   180 a.a.
NCBI ID   WP_017880113.1    Uniprot ID   -
Organism   Escherichia coli strain PigCaeca_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4124449..4134991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5285_RS20110 (E5285_20100) - 4127469..4128476 (-) 1008 WP_135927393.1 restriction endonuclease -
  E5285_RS20115 (E5285_20105) - 4128735..4129076 (-) 342 WP_024360470.1 TA system toxin CbtA family protein -
  E5285_RS20120 (E5285_20110) - 4129097..4129438 (-) 342 WP_096836435.1 type IV toxin-antitoxin system YeeU family antitoxin -
  E5285_RS20125 (E5285_20115) radC 4129449..4129991 (-) 543 WP_017880113.1 DNA repair protein RadC Machinery gene
  E5285_RS20130 (E5285_20120) - 4130004..4130444 (-) 441 WP_044060602.1 antirestriction protein -
  E5285_RS20135 (E5285_20125) - 4130475..4131296 (-) 822 WP_060175536.1 DUF932 domain-containing protein -
  E5285_RS20140 (E5285_20130) - 4131395..4131616 (-) 222 WP_094917785.1 DUF905 domain-containing protein -
  E5285_RS20145 (E5285_20135) - 4131688..4132137 (-) 450 WP_135927395.1 IrmA family protein -
  E5285_RS20150 (E5285_20140) - 4132134..4132586 (-) 453 WP_048236233.1 YfjS/YafY family lipoprotein -
  E5285_RS20155 (E5285_20145) - 4132623..4133192 (-) 570 WP_004929046.1 hypothetical protein -
  E5285_RS20160 (E5285_20150) - 4133192..4133896 (-) 705 WP_135927397.1 WYL domain-containing protein -
  E5285_RS20165 (E5285_20155) - 4134097..4134972 (-) 876 WP_044060600.1 GTPase family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19967.75 Da        Isoelectric Point: 6.8450

>NTDB_id=316282 E5285_RS20125 WP_017880113.1 4129449..4129991(-) (radC) [Escherichia coli strain PigCaeca_2]
MNIALSPVSSQPELFPLAVMAQHDYLLTATSGLTPYAQRTIRRATNLLDKYLRQPGISFTSSTAARDWLRLQLAGQEREV
FMVLYLDNQHRLLESETLFAGSINHVQVHPREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALALVDVNT
LDHLVIGSDGIVSFAERGWI

Nucleotide


Download         Length: 543 bp        

>NTDB_id=316282 E5285_RS20125 WP_017880113.1 4129449..4129991(-) (radC) [Escherichia coli strain PigCaeca_2]
ATGAATATCGCATTATCCCCGGTATCATCACAGCCTGAACTTTTTCCGCTGGCGGTTATGGCTCAACATGATTACCTGCT
TACCGCGACATCCGGACTAACACCCTATGCTCAACGGACCATCCGACGCGCTACCAATCTGCTGGATAAATATCTGCGCC
AGCCCGGTATATCCTTTACCTCAAGTACTGCTGCCCGTGACTGGCTTCGGTTACAGCTGGCAGGACAAGAACGGGAAGTG
TTTATGGTGCTCTATCTCGATAACCAGCATCGTTTACTGGAGAGTGAAACGCTATTTGCCGGTTCGATTAACCATGTGCA
GGTCCATCCCCGTGAGGTAGTGAAATCAGCGCTTCGTTTCAATGCTGCGGCCGTTGTGTTGGCGCATAACCATCCATCCG
GTGATCCGGAGCCCAGCCAATGTGACCGCAACATTACGGGCAGGCTTAAAGAAGCGCTGGCACTGGTTGATGTGAACACA
CTCGATCATCTGGTTATCGGTTCAGATGGAATTGTGTCGTTTGCAGAGCGAGGCTGGATATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(60-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.421

84.444

0.367

Multiple sequence alignment