Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4J00_RS05270 Genome accession   NZ_CP032478
Coordinates   1070909..1071313 (-) Length   134 a.a.
NCBI ID   WP_139519644.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065909..1076313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J00_RS05245 recJ 1066327..1067877 (+) 1551 WP_139519641.1 single-stranded-DNA-specific exonuclease RecJ -
  D4J00_RS05250 - 1067877..1068758 (+) 882 WP_139519642.1 RluA family pseudouridine synthase -
  D4J00_RS05255 - 1068863..1069429 (-) 567 WP_128077437.1 hypothetical protein -
  D4J00_RS05260 - 1069413..1069751 (-) 339 WP_128077438.1 hypothetical protein -
  D4J00_RS05265 - 1069878..1070678 (-) 801 WP_139519643.1 tetratricopeptide repeat protein -
  D4J00_RS05270 dprB 1070909..1071313 (-) 405 WP_139519644.1 Holliday junction resolvase RuvX Machinery gene
  D4J00_RS05275 dprA 1071310..1072110 (-) 801 WP_139519645.1 DNA-processing protein DprA Machinery gene
  D4J00_RS05280 minE 1072117..1072350 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4J00_RS05285 minD 1072347..1073153 (-) 807 WP_108316044.1 septum site-determining protein MinD -
  D4J00_RS05290 ilvC 1073177..1074169 (-) 993 WP_139519646.1 ketol-acid reductoisomerase -
  D4J00_RS05300 - 1074430..1075212 (+) 783 WP_139519647.1 NAD+ synthase -
  D4J00_RS05305 - 1075209..1076147 (+) 939 WP_139519648.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15204.62 Da        Isoelectric Point: 8.2822

>NTDB_id=316270 D4J00_RS05270 WP_139519644.1 1070909..1071313(-) (dprB) [Helicobacter pylori strain 25-A-EK9]
MILACDVGLKRIGIAVLLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316270 D4J00_RS05270 WP_139519644.1 1070909..1071313(-) (dprB) [Helicobacter pylori strain 25-A-EK9]
GTGATTTTGGCGTGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTGTCTTGCCCTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAACCCAATGAAAGCTATGCGGACACGAACGCGCGTATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGAGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963

Multiple sequence alignment