Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4K17_RS01320 Genome accession   NZ_CP032477
Coordinates   263516..264514 (+) Length   332 a.a.
NCBI ID   WP_139521456.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-C-EK8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 258516..269514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K17_RS01290 panD 259931..260284 (+) 354 WP_033599840.1 aspartate 1-decarboxylase -
  D4K17_RS01295 - 260287..260589 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4K17_RS01300 - 260589..261584 (+) 996 WP_139522314.1 PDZ domain-containing protein -
  D4K17_RS01305 comB6 261592..262647 (+) 1056 WP_139521454.1 P-type conjugative transfer protein TrbL Machinery gene
  D4K17_RS01310 comB7 262663..262776 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4K17_RS01315 comB8 262773..263516 (+) 744 WP_108557395.1 virB8 family protein Machinery gene
  D4K17_RS01320 comB9 263516..264514 (+) 999 WP_139521456.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4K17_RS01325 comB10 264507..265643 (+) 1137 WP_139521457.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4K17_RS01330 - 265713..267125 (+) 1413 WP_139521459.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4K17_RS01335 gmd 267166..268311 (+) 1146 WP_139521460.1 GDP-mannose 4,6-dehydratase -
  D4K17_RS01340 - 268304..269236 (+) 933 WP_139521462.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 38482.27 Da        Isoelectric Point: 9.4448

>NTDB_id=316253 D4K17_RS01320 WP_139521456.1 263516..264514(+) (comB9) [Helicobacter pylori strain 169-C-EK8]
MRKILYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQKEDKENKENALENALENTPKNNNKPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRK
WYCLWACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDY
LCIRFVKKGKDE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=316253 D4K17_RS01320 WP_139521456.1 263516..264514(+) (comB9) [Helicobacter pylori strain 169-C-EK8]
ATGCGTAAGATTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGAGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAAAGAAGATAAAGAAAATAAAGAAAATGCCCTTGAAAACGCCCTTGAAAA
TACCCCAAAAAACAACAACAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTG
GCGATAACACTAATGCCATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAA
TGGTATTGTTTATGGGCTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAATGACAAGCAATTCAC
TTATTTCAAATTTGACAAAAGATTAGCGCTTTCTAAATTCCCCGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGG
TGAATACAAGGATTGTAGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGTTGGGCAAGGACTAT
TTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.88

100

0.949

Multiple sequence alignment