Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO103_RS19805 Genome accession   NC_013353
Coordinates   3829651..3830127 (-) Length   158 a.a.
NCBI ID   WP_001364966.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 str. 12009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3824651..3835127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO103_RS19765 (ECO103_3748) mug 3826011..3826517 (-) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -
  ECO103_RS19775 (ECO103_3749) - 3826817..3827662 (-) 846 WP_001274562.1 DUF4942 domain-containing protein -
  ECO103_RS19780 - 3827747..3827944 (-) 198 WP_000772026.1 DUF957 domain-containing protein -
  ECO103_RS19785 (ECO103_3750) - 3827964..3828452 (-) 489 WP_001054227.1 DUF5983 family protein -
  ECO103_RS19790 (ECO103_3751) - 3828449..3828829 (-) 381 WP_000854687.1 TA system toxin CbtA family protein -
  ECO103_RS19795 (ECO103_3752) - 3828918..3829286 (-) 369 WP_012816826.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECO103_RS19800 (ECO103_3753) - 3829361..3829582 (-) 222 WP_000692340.1 DUF987 domain-containing protein -
  ECO103_RS19805 (ECO103_3754) radC 3829651..3830127 (-) 477 WP_001364966.1 RadC family protein Machinery gene
  ECO103_RS19810 (ECO103_3755) - 3830143..3830616 (-) 474 WP_001364892.1 antirestriction protein -
  ECO103_RS19815 (ECO103_3756) - 3830710..3830955 (-) 246 WP_000680588.1 hypothetical protein -
  ECO103_RS19820 (ECO103_3757) - 3830955..3831776 (-) 822 WP_001234566.1 DUF932 domain-containing protein -
  ECO103_RS19825 (ECO103_3758) - 3831996..3832406 (-) 411 WP_000848830.1 hypothetical protein -
  ECO103_RS19830 (ECO103_3759) - 3832422..3833099 (-) 678 WP_000775503.1 hypothetical protein -
  ECO103_RS19835 (ECO103_3760) - 3833234..3834304 (-) 1071 WP_000102649.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17833.50 Da        Isoelectric Point: 8.7154

>NTDB_id=31623 ECO103_RS19805 WP_001364966.1 3829651..3830127(-) (radC) [Escherichia coli O103:H2 str. 12009]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVGFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGRQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31623 ECO103_RS19805 WP_001364966.1 3829651..3830127(-) (radC) [Escherichia coli O103:H2 str. 12009]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGGCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGACAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment