Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4K88_RS05810 Genome accession   NZ_CP032475
Coordinates   1175796..1176200 (-) Length   134 a.a.
NCBI ID   WP_139532493.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-F-EK9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1170796..1181200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K88_RS05765 - 1171499..1171834 (-) 336 WP_001862999.1 hypothetical protein -
  D4K88_RS05770 - 1171824..1172609 (-) 786 WP_139532488.1 hypothetical protein -
  D4K88_RS05775 - 1172609..1172990 (-) 382 Protein_1109 DUF1294 domain-containing protein -
  D4K88_RS05785 - 1173287..1173553 (-) 267 WP_001883605.1 hypothetical protein -
  D4K88_RS05790 - 1173541..1173915 (-) 375 WP_001882828.1 lysozyme -
  D4K88_RS05795 - 1173972..1174532 (-) 561 WP_139532490.1 hypothetical protein -
  D4K88_RS05800 - 1174516..1174854 (-) 339 WP_139532492.1 hypothetical protein -
  D4K88_RS05805 - 1174981..1175562 (-) 582 WP_120906710.1 tetratricopeptide repeat protein -
  D4K88_RS05810 dprB 1175796..1176200 (-) 405 WP_139532493.1 Holliday junction resolvase RuvX Machinery gene
  D4K88_RS05815 dprA 1176197..1176997 (-) 801 WP_139532495.1 DNA-processing protein DprA Machinery gene
  D4K88_RS05820 minE 1177004..1177237 (-) 234 WP_139532497.1 cell division topological specificity factor MinE -
  D4K88_RS05825 minD 1177234..1178040 (-) 807 WP_139532499.1 septum site-determining protein MinD -
  D4K88_RS05830 ilvC 1178064..1179056 (-) 993 WP_139532501.1 ketol-acid reductoisomerase -
  D4K88_RS05840 - 1179305..1180087 (+) 783 WP_139532502.1 NAD+ synthase -
  D4K88_RS05845 - 1180084..1181022 (+) 939 WP_139532504.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15196.68 Da        Isoelectric Point: 9.1627

>NTDB_id=316211 D4K88_RS05810 WP_139532493.1 1175796..1176200(-) (dprB) [Helicobacter pylori strain 381-F-EK9]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316211 D4K88_RS05810 WP_139532493.1 1175796..1176200(-) (dprB) [Helicobacter pylori strain 381-F-EK9]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTACGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
TGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment