Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4L53_RS05760 Genome accession   NZ_CP032472
Coordinates   1180277..1180681 (-) Length   134 a.a.
NCBI ID   WP_000599172.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-A2-EK4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1175277..1185681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L53_RS05715 - 1175550..1176389 (-) 840 WP_306821130.1 hypothetical protein -
  D4L53_RS08355 - 1176556..1176753 (-) 198 WP_306821131.1 hypothetical protein -
  D4L53_RS05725 - 1176743..1177528 (-) 786 WP_139518687.1 hypothetical protein -
  D4L53_RS05730 - 1177528..1177909 (-) 382 Protein_1080 DUF1294 domain-containing protein -
  D4L53_RS05735 - 1178214..1178471 (-) 258 WP_180339187.1 lysozyme -
  D4L53_RS08255 - 1178474..1178702 (-) 229 Protein_1082 lysozyme -
  D4L53_RS05745 - 1178732..1179298 (-) 567 WP_139518690.1 hypothetical protein -
  D4L53_RS05750 - 1179282..1179587 (-) 306 WP_000699933.1 hypothetical protein -
  D4L53_RS05755 - 1179713..1180171 (-) 459 WP_139518691.1 tetratricopeptide repeat protein -
  D4L53_RS05760 dprB 1180277..1180681 (-) 405 WP_000599172.1 Holliday junction resolvase RuvX Machinery gene
  D4L53_RS05765 dprA 1180678..1181478 (-) 801 WP_139518692.1 DNA-processing protein DprA Machinery gene
  D4L53_RS05770 minE 1181485..1181718 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4L53_RS05775 minD 1181715..1182521 (-) 807 WP_139518693.1 septum site-determining protein MinD -
  D4L53_RS05780 ilvC 1182545..1183537 (-) 993 WP_139518695.1 ketol-acid reductoisomerase -
  D4L53_RS05790 - 1183795..1184577 (+) 783 WP_139518696.1 NAD+ synthase -
  D4L53_RS05795 - 1184574..1185512 (+) 939 WP_139518697.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15232.72 Da        Isoelectric Point: 9.1637

>NTDB_id=316151 D4L53_RS05760 WP_000599172.1 1180277..1180681(-) (dprB) [Helicobacter pylori strain 479-A2-EK4]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQKVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316151 D4L53_RS05760 WP_000599172.1 1180277..1180681(-) (dprB) [Helicobacter pylori strain 479-A2-EK4]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAACCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAATAAGAGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAAAAGGTTTTAAAAAATC
ATTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

99.254

100

0.993

Multiple sequence alignment