Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D4L53_RS00275 | Genome accession | NZ_CP032472 |
| Coordinates | 63841..64416 (+) | Length | 191 a.a. |
| NCBI ID | WP_139518003.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 479-A2-EK4 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58841..69416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L53_RS00250 | uvrD | 59530..61575 (+) | 2046 | WP_201737160.1 | DNA helicase UvrD | - |
| D4L53_RS00255 | flgA | 61572..62228 (+) | 657 | WP_139518001.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D4L53_RS00260 | - | 62238..62801 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| D4L53_RS00265 | coaD | 62801..63274 (+) | 474 | WP_001169274.1 | pantetheine-phosphate adenylyltransferase | - |
| D4L53_RS00270 | tmk | 63278..63853 (+) | 576 | WP_139518002.1 | dTMP kinase | - |
| D4L53_RS00275 | comFC | 63841..64416 (+) | 576 | WP_139518003.1 | ComF family protein | Machinery gene |
| D4L53_RS00280 | - | 64449..66488 (+) | 2040 | WP_139518004.1 | N-6 DNA methylase | - |
| D4L53_RS00285 | - | 66485..67698 (+) | 1214 | Protein_55 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21459.11 Da Isoelectric Point: 9.4585
>NTDB_id=316144 D4L53_RS00275 WP_139518003.1 63841..64416(+) (comFC) [Helicobacter pylori strain 479-A2-EK4]
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRNFTFRGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRNFTFRGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=316144 D4L53_RS00275 WP_139518003.1 63841..64416(+) (comFC) [Helicobacter pylori strain 479-A2-EK4]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAGGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGAATTTCACCTTCAGGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAGGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGAATTTCACCTTCAGGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |