Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4L66_RS00010 Genome accession   NZ_CP032471
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_139535415.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-C2-EK2     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L66_RS00005 dnaA 1..1368 (+) 1368 WP_139517966.1 chromosomal replication initiator protein DnaA -
  D4L66_RS00010 comH 1597..3036 (+) 1440 WP_139535415.1 competence protein Machinery gene
  D4L66_RS00020 - 3216..3968 (+) 753 WP_000767511.1 exodeoxyribonuclease III -
  D4L66_RS00025 - 3965..4600 (-) 636 WP_024114269.1 outer membrane protein -
  D4L66_RS00030 - 4604..4960 (-) 357 WP_025276469.1 hypothetical protein -
  D4L66_RS00035 recG 5042..6913 (+) 1872 WP_139517967.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54885.71 Da        Isoelectric Point: 6.6633

>NTDB_id=316125 D4L66_RS00010 WP_139535415.1 1597..3036(+) (comH) [Helicobacter pylori strain 479-C2-EK2]
MKKSLCLSFFLNFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPAIPRNTQIVFSSKELKEPHAHQMPSLNAPMQKPQNKPSSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
ITPGKTNPTNETQTPTNDTKPPLKYSSEDQENNLFITPPTEKTLPNNTPNTDSNENNENNENRDNVEKQAIRDANIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=316125 D4L66_RS00010 WP_139535415.1 1597..3036(+) (comH) [Helicobacter pylori strain 479-C2-EK2]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGAATTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAAACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCCAACCGCCCTGCTATCCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
ATAACTCCTGGCAAAACAAACCCCACTAACGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGTATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACACTGATAGTA
ATGAAAACAATGAAAATAACGAAAATAGGGACAATGTGGAAAAACAAGCCATTAGAGATGCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGACGATGAAAACTTGCAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
AACTGCGACAGACATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TTTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGTTCTACGGAAAAATGCAAAAGGGCTAGAGCGAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAAAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGATGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATATAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCTTTAGAAATAGAAGAACAGCCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.781

100

0.948

Multiple sequence alignment