Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KAN01_RS10040 Genome accession   NZ_CP038816
Coordinates   2095619..2096254 (-) Length   211 a.a.
NCBI ID   WP_004887494.1    Uniprot ID   A0AA36NWB2
Organism   Acinetobacter nosocomialis strain KAN01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090619..2101254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS10015 (KAN01_10015) - 2090675..2091655 (-) 981 WP_032011231.1 DNA polymerase III subunit delta' -
  KAN01_RS10020 (KAN01_10020) kdsB 2091667..2092428 (-) 762 WP_004709120.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KAN01_RS10025 (KAN01_10025) lpxK 2092438..2093448 (-) 1011 WP_032011235.1 tetraacyldisaccharide 4'-kinase -
  KAN01_RS10030 (KAN01_10030) msbA 2093451..2095178 (-) 1728 WP_004709124.1 lipid A export permease/ATP-binding protein MsbA -
  KAN01_RS10035 (KAN01_10035) - 2095175..2095603 (-) 429 WP_004887492.1 ExbD/TolR family protein -
  KAN01_RS10040 (KAN01_10040) exbB 2095619..2096254 (-) 636 WP_004887494.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KAN01_RS10045 (KAN01_10045) - 2096304..2097191 (-) 888 WP_032011236.1 ParB/RepB/Spo0J family partition protein -
  KAN01_RS10050 (KAN01_10050) - 2097188..2097970 (-) 783 WP_002050124.1 ParA family protein -
  KAN01_RS10055 (KAN01_10055) rsmG 2097992..2098624 (-) 633 WP_002050181.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KAN01_RS10060 (KAN01_10060) murU 2098712..2099401 (-) 690 WP_002049766.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  KAN01_RS10065 (KAN01_10065) - 2099401..2100414 (-) 1014 WP_106479495.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23135.97 Da        Isoelectric Point: 6.6434

>NTDB_id=316098 KAN01_RS10040 WP_004887494.1 2095619..2096254(-) (exbB) [Acinetobacter nosocomialis strain KAN01]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGSADISHIITNLEQDTDASSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=316098 KAN01_RS10040 WP_004887494.1 2095619..2096254(-) (exbB) [Acinetobacter nosocomialis strain KAN01]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTAGTGCAGATATTTCTCATA
TCATTACAAATTTGGAGCAAGATACTGATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGCTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTCATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTACAAAATTACATTGCGGAGTTAGAGCA
ACAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36NWB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422

Multiple sequence alignment