Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KAN01_RS03250 Genome accession   NZ_CP038816
Coordinates   665747..666109 (+) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain KAN01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 660747..671109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS03235 (KAN01_03235) - 663238..664356 (-) 1119 WP_032010078.1 efflux RND transporter periplasmic adaptor subunit -
  KAN01_RS03240 (KAN01_03240) - 664416..665054 (-) 639 WP_032010079.1 hypothetical protein -
  KAN01_RS03245 (KAN01_03245) pilG 665337..665720 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  KAN01_RS03250 (KAN01_03250) pilH 665747..666109 (+) 363 WP_002051151.1 PleD family two-component system response regulator Machinery gene
  KAN01_RS03255 (KAN01_03255) - 666167..666703 (+) 537 WP_002051357.1 chemotaxis protein CheW -
  KAN01_RS03260 (KAN01_03260) - 666750..668831 (+) 2082 WP_135924553.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=316078 KAN01_RS03250 WP_002051151.1 665747..666109(+) (pilH) [Acinetobacter nosocomialis strain KAN01]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=316078 KAN01_RS03250 WP_002051151.1 665747..666109(+) (pilH) [Acinetobacter nosocomialis strain KAN01]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGTGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGTGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment