Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D5290_RS04950 Genome accession   NZ_CP032464
Coordinates   983697..985508 (+) Length   603 a.a.
NCBI ID   WP_027821200.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain ATG-K6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 978697..990508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5290_RS04925 (D5290_04925) - 979411..979911 (-) 501 WP_003640886.1 antibiotic biosynthesis monooxygenase -
  D5290_RS04930 (D5290_04930) - 980052..980795 (+) 744 WP_003644623.1 MBL fold metallo-hydrolase -
  D5290_RS04935 (D5290_04935) spxA 981082..981480 (+) 399 WP_011101690.1 transcriptional regulator SpxA -
  D5290_RS04940 (D5290_04940) - 981616..982347 (+) 732 WP_003640883.1 adaptor protein MecA -
  D5290_RS04945 (D5290_04945) - 982534..983619 (+) 1086 WP_053338973.1 competence protein CoiA -
  D5290_RS04950 (D5290_04950) pepF 983697..985508 (+) 1812 WP_027821200.1 oligoendopeptidase F Regulator
  D5290_RS04955 (D5290_04955) - 985723..986358 (-) 636 WP_003640880.1 DsbA family protein -
  D5290_RS04960 (D5290_04960) - 986651..987313 (+) 663 WP_003640879.1 GTP pyrophosphokinase family protein -
  D5290_RS04965 (D5290_04965) - 987310..988113 (+) 804 WP_003640878.1 NAD kinase -
  D5290_RS04970 (D5290_04970) - 988110..989012 (+) 903 WP_027821199.1 RluA family pseudouridine synthase -
  D5290_RS04975 (D5290_04975) - 989266..989904 (-) 639 WP_003644620.1 copper homeostasis protein CutC -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67663.72 Da        Isoelectric Point: 4.8823

>NTDB_id=316075 D5290_RS04950 WP_027821200.1 983697..985508(+) (pepF) [Lactiplantibacillus plantarum strain ATG-K6]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADIAQVKAAIPTVTALKETFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILELTPGELDTYLDENVDLRDYRHLLDTIRLQKGHVLSESEEA
LLAGASDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYS
YQQAQATALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGAAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTQQTDAVADYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFEVFEERLNEFEQLVTQD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=316075 D5290_RS04950 WP_027821200.1 983697..985508(+) (pepF) [Lactiplantibacillus plantarum strain ATG-K6]
ATGGTAGCAACCAAACAATTGCCGACCCGTTCGGCCGTTCCTGAAGAACTGACGTGGGATTTGACGCCCATTTATGCAGA
TCAGGCCGCGTATGAGGCGGATATTGCACAAGTCAAAGCTGCAATCCCCACCGTCACTGCGCTTAAAGAAACGTTTACAA
GCTCGGCCGACACGGTGCTGGCTGGCATCCAGGCTGTTTTAGCGCTGTATCGTCGGTTAGAGAAAGTGGCGGTATACGCA
AGTCTGAAAAGTGACCAGGATACTGGCAATAGTACCAATGCGGCTTTAGACGATCAAGCTAGTAGTTTGACTGCCAAGGT
ATCCGCAGCGACTGCCTGGTTCGAACCAGCAATCTTGGAATTAACGCCGGGCGAATTGGATACGTACCTTGATGAAAACG
TCGATTTACGTGATTATCGGCATTTGTTGGATACGATCCGGTTGCAAAAGGGACACGTTCTGTCTGAAAGCGAAGAAGCT
TTACTCGCAGGCGCTAGTGATATTTTTGGTGCTTCTGCGAAAACTTTTGGTGTACTGAATAACGCTGACTTTCAATTTCC
AACGGTAAAGGATGACGACGGCAACCCTGTCAAATTGTCACAAGGAATTTATGGGGTGTTACTTGAGTCCGTTCATCCGG
CTGTTCGGCGAGAGGCGTTTGAAGCACTGTATAAAGTATACGGCCAGTTCCGGCGAACACTTGCTTCGACTTTAGCTAGC
CAAGTCAAGGTACACAATTTTGTTGCCCAGGCTCATCATTATCCAGATGCGCGGACGGCAGCACTTGCTGCCAATCAGAT
TCCGACGGCGGTTTACGATTCTTTAGTCACGTCCGTTGACAAGCATTTGGACTTATTGCACCGGTATGTTGCGCTACGGA
AACAACTGCTCGGAGTTGATCAGTTGCATATGTATGATATGTACACGCCATTGGCACCCAAGCCGACGACCAACTATTCC
TACCAGCAGGCTCAAGCAACTGCTTTACAAGCGCTCAAAATTTTGGGTCCTGATTATCTCAAACACGTCAAAACAGCGTT
TGCTTCACGGTGGATTGATGTGGTGGAAAATCAAGGCAAACGTAGCGGGGCGTATTCGTCAGGAATGTATGATACCGCGC
CATACATGCTGTTGAACTGGCAGGATAATATTGATAATTTATATACGTTGGTGCACGAAATGGGACACAGTATGCACTCT
TACTTCACGACACATCATCAGCCTTATCAGTATGGTGACTATTCAATTTTCGTGGCGGAAATTGCTTCAACGACTAATGA
AAACTTGTTGACGAACTATTTCTTAGCGACTGAACAAGATCCAAAAATGCGGGCGTATGTCTTGAATTACTACTTAGATG
GATTTAAAGGCACCGTTTTCCGGCAGACGCAATTTGCTGAGTTTGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCTTTGACTGCCGATCGCTTGTCAAAACATTATTTGCAGTTGAACCAACGCTACTATGGTGCCGCCGTCGTCAGTGATCC
GCAAATTGCCGACGAATGGTCCCGTATCCCGCATTTTTATTACAATTATTATGTTTATCAGTATGCCACGGGTTTTGCAG
CGGCCTCAACGTTGGCTGACCGTATTAGTACGCAACAGACAGATGCTGTTGCGGATTATCTCGGTTACTTGAAAGCTGGT
TCATCTGCTTTCCCAATCGATGTCATGCACCGAGCTGGAGTTGATATGACCAAGCCTGATTATCTTGATGCAGCTTTCGA
GGTATTTGAAGAACGATTAAATGAATTTGAACAGTTGGTCACCCAAGATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.507

0.507

Multiple sequence alignment