Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D5289_RS05640 Genome accession   NZ_CP032460
Coordinates   1171020..1172831 (-) Length   603 a.a.
NCBI ID   WP_129531748.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain ATG-K2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1166020..1177831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5289_RS05615 (D5289_05620) - 1166642..1167280 (+) 639 WP_054397408.1 copper homeostasis protein CutC -
  D5289_RS05620 (D5289_05625) - 1167531..1168433 (-) 903 WP_054397411.1 RluA family pseudouridine synthase -
  D5289_RS05625 (D5289_05630) - 1168430..1169233 (-) 804 WP_054397414.1 NAD kinase -
  D5289_RS05630 (D5289_05635) - 1169230..1169892 (-) 663 WP_054397417.1 GTP pyrophosphokinase family protein -
  D5289_RS05635 (D5289_05640) - 1170184..1170819 (+) 636 WP_054397419.1 DsbA family protein -
  D5289_RS05640 (D5289_05645) pepF 1171020..1172831 (-) 1812 WP_129531748.1 oligoendopeptidase F Regulator
  D5289_RS05645 (D5289_05650) - 1172909..1173994 (-) 1086 WP_054397425.1 competence protein CoiA -
  D5289_RS05650 (D5289_05655) - 1174169..1174897 (-) 729 WP_054397427.1 adaptor protein MecA -
  D5289_RS05655 (D5289_05660) spxA 1175033..1175431 (-) 399 WP_011101690.1 transcriptional regulator SpxA -
  D5289_RS05660 (D5289_05665) - 1175718..1176461 (-) 744 WP_054397430.1 MBL fold metallo-hydrolase -
  D5289_RS05665 (D5289_05670) - 1176602..1177102 (+) 501 WP_054397432.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67727.89 Da        Isoelectric Point: 5.1526

>NTDB_id=316050 D5289_RS05640 WP_129531748.1 1171020..1172831(-) (pepF) [Lactiplantibacillus plantarum strain ATG-K2]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADVAQVKAAIPTVSALKEDFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILELTPGELDTYLDENVDLRDYRHLLDTVRLQKGHVLSENEEA
LLAGAGDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVATAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYT
YQQAQSTALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTHFAEFEQWLHEQDQEGQ
ALTADRLSKYYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTKKPGAVDDYLGYLKAG
SSAFPIDVMHRAGVDMTKSDYLDAAFKVFEERLDEFEQLVTRK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=316050 D5289_RS05640 WP_129531748.1 1171020..1172831(-) (pepF) [Lactiplantibacillus plantarum strain ATG-K2]
ATGGTAGCAACCAAACAATTGCCGACCCGGTCGGCTGTTCCTGAAGAATTGACATGGGATTTGACACCGATTTATGCTGA
TCAGGCTGCATATGAGGCGGATGTTGCACAAGTTAAAGCGGCAATCCCCACCGTTAGTGCGCTCAAAGAAGATTTTACAA
GCTCGGCCGACACGGTGTTGGCAGGCATTCAGGCCGTTTTAGCTTTGTATCGTCGCCTAGAGAAGGTGGCGGTCTATGCG
AGTTTGAAAAGTGATCAGGATACTGGTAATAGTACCAACGCTGCTTTGGATGACCAGGCTAGTAGTTTGACCGCCAAAGT
GTCCGCAGCAACTGCCTGGTTTGAACCGGCAATCTTGGAATTAACGCCGGGCGAATTAGATACGTATCTTGATGAAAACG
TCGATTTACGTGATTACCGGCACTTGTTGGATACGGTTCGCTTACAAAAGGGCCACGTTCTATCTGAGAACGAGGAAGCC
TTACTTGCCGGAGCTGGCGATATTTTTGGGGCTTCCGCGAAGACTTTTGGTGTGTTGAATAACGCTGACTTTCAATTTCC
GACGGTGAAGGATGACGACGGTAACCCTGTCAAATTGTCGCAAGGCATTTATGGCGTGCTGCTTGAGTCCGTTCATCCGG
CCGTTCGGCGTGAGGCATTTGAGGCGCTATATAAAGTGTATGGGCAATTTCGACGGACGCTCGCGTCGACGTTAGCTAGC
CAAGTCAAGGTGCATAATTTCGTCGCTACGGCTCACCACTATCCGGATGCGCGAACGGCGGCACTTGCGGCCAATCAGAT
TCCGACAGCGGTCTATGATTCTTTAGTCACGTCTGTTGACAAGCACTTAGATCTGTTACACCGTTACGTTGCCTTACGAA
AGCAGTTGCTTGGTGTTGATCAGTTGCACATGTATGATATGTATACGCCTTTGGCACCTAAGCCGACGACCAATTATACC
TATCAACAGGCCCAATCGACTGCCTTACAAGCCCTCAAAATTTTGGGACCTGATTATCTGAAACACGTCAAAACAGCGTT
TGCTTCGCGGTGGATCGATGTGGTGGAAAACCAAGGCAAACGTAGCGGGGCATATTCGTCTGGAATGTATGATACTGCGC
CGTATATGCTGTTGAACTGGCAGGATAATATTGATAATTTATACACGTTGGTGCATGAAATGGGACACAGTATGCACTCA
TACTTCACGACGCATCATCAACCTTATCAATATGGGGATTATTCAATTTTTGTGGCGGAAATTGCGTCAACAACTAATGA
AAACTTATTGACGAACTATTTCCTAGCAACTGAACAAGACCCTAAAATGCGAGCGTACGTCTTGAACTACTACTTGGATG
GCTTTAAGGGCACTGTTTTCCGGCAGACCCACTTCGCTGAGTTCGAACAGTGGCTCCATGAACAGGATCAAGAAGGGCAG
GCCTTGACTGCGGATCGCTTATCAAAATATTATTTACAGTTGAACCAACGTTACTATGGTGATGCCGTCGTCAGTGATCC
ACAAATTGCTGATGAATGGTCTCGGATTCCACACTTCTATTACAATTATTATGTTTATCAATACGCTACGGGCTTCGCAG
CGGCATCCACGCTAGCCGACCGTATCAGTACGAAAAAGCCTGGTGCCGTTGATGATTACCTCGGCTATTTGAAAGCCGGT
TCATCAGCGTTCCCAATCGATGTCATGCATCGCGCAGGGGTTGACATGACTAAGTCAGATTATTTGGACGCAGCCTTTAA
GGTATTTGAAGAACGGCTAGACGAGTTCGAACAACTGGTCACCCGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.02

98.507

0.512

Multiple sequence alignment