Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECO103_RS13075 Genome accession   NC_013353
Coordinates   2486883..2487359 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 str. 12009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2481883..2492359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO103_RS13045 (ECO103_2473) - 2482047..2482952 (+) 906 WP_000625257.1 diguanylate cyclase regulator RdcB family protein -
  ECO103_RS13050 (ECO103_2474) - 2482949..2484019 (+) 1071 WP_000102664.1 patatin-like phospholipase family protein -
  ECO103_RS13055 (ECO103_2475) - 2484155..2484838 (+) 684 WP_000775500.1 hypothetical protein -
  ECO103_RS13060 (ECO103_2476) - 2484854..2485264 (+) 411 WP_000846713.1 hypothetical protein -
  ECO103_RS13065 (ECO103_2477) - 2485485..2486306 (+) 822 WP_001234549.1 DUF932 domain-containing protein -
  ECO103_RS13070 (ECO103_2478) - 2486388..2486867 (+) 480 WP_000860060.1 antirestriction protein -
  ECO103_RS13075 (ECO103_2479) radC 2486883..2487359 (+) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  ECO103_RS13080 (ECO103_2480) yeeT 2487422..2487643 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECO103_RS13085 (ECO103_2481) cbeA 2487717..2488085 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECO103_RS13090 (ECO103_2482) cbtA 2488174..2488547 (+) 374 Protein_2522 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECO103_RS13095 (ECO103_2483) yeeW 2488544..2488738 (+) 195 WP_000988599.1 DUF5983 family protein -
  ECO103_RS32120 - 2488784..2488864 (+) 81 Protein_2524 hypothetical protein -
  ECO103_RS33015 - 2489153..2489326 (-) 174 WP_032082634.1 transposase domain-containing protein -
  ECO103_RS33020 - 2489353..2489535 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ECO103_RS13115 (ECO103_2485) tmaR 2489636..2489965 (-) 330 WP_000450409.1 DUF496 family protein -
  ECO103_RS13120 (ECO103_2486) yeeA 2490137..2491195 (-) 1059 WP_001200891.1 FUSC family protein -
  ECO103_RS13125 (ECO103_2487) sbmC 2491393..2491866 (-) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=31602 ECO103_RS13075 WP_001186773.1 2486883..2487359(+) (radC) [Escherichia coli O103:H2 str. 12009]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31602 ECO103_RS13075 WP_001186773.1 2486883..2487359(+) (radC) [Escherichia coli O103:H2 str. 12009]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment