Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   D5S12_RS03610 Genome accession   NZ_CP032459
Coordinates   813792..815384 (-) Length   530 a.a.
NCBI ID   WP_003435661.1    Uniprot ID   A0A6B2B3R3
Organism   Pseudomonas syringae strain CAS02     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 808792..820384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S12_RS03595 (D5S12_03855) - 810796..811194 (+) 399 WP_003371127.1 type IV pilin protein -
  D5S12_RS03600 (D5S12_03860) thiO 811220..812323 (+) 1104 WP_003371129.1 glycine oxidase ThiO -
  D5S12_RS03605 (D5S12_03870) pilR 812452..813789 (-) 1338 WP_003371131.1 sigma-54-dependent transcriptional regulator Regulator
  D5S12_RS03610 (D5S12_03875) pilS 813792..815384 (-) 1593 WP_003435661.1 sensor histidine kinase Regulator
  D5S12_RS03615 (D5S12_03880) - 815374..815613 (-) 240 WP_032609810.1 PP0621 family protein -
  D5S12_RS03620 (D5S12_03885) - 815733..816755 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  D5S12_RS03625 (D5S12_03890) rluD 816905..817867 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D5S12_RS03630 (D5S12_03895) pgeF 817864..818592 (+) 729 WP_003435662.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57952.85 Da        Isoelectric Point: 6.8620

>NTDB_id=316018 D5S12_RS03610 WP_003435661.1 813792..815384(-) (pilS) [Pseudomonas syringae strain CAS02]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALHLLGQEQLVGQLID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDPRSELPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=316018 D5S12_RS03610 WP_003435661.1 813792..815384(-) (pilS) [Pseudomonas syringae strain CAS02]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCGCAGCGGATTCTGCGGCTGTACCACCTCTATCGACTGACCAT
CGGCGTCGTACTGGTCCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCGCTGTTCTACGCCGCCGGCGGGCCCTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTAGCGATCAGCAATGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCTTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAGCAGCG
CGCGGCGGATGTCGACAGCCTGGAGGCACTCAACGCACTCATTCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGGGCCTTACACCTGCTGGGCCAGGAACAACTGGTCGGCCAGCTCATCGAC
ACCTGCTCGCCACAACTGGTCGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTGGGGCTGGTACTGCAACCGAGCTTCGCCACACTCAACCGTGGAGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCACGAA
ATACGCAACCCGCTGGGTGCCGTCAGTCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGATCGGGTCATCGAAAATGTCCTGCAATTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTCGACCTGAAAACCTGGCTGGAACACTTTGTTGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAACTGACGCAAATCATGACCAA
CCTGTTGCAGAACGGCCTGCGCTACAGCGGCAAAAATCATCCATCAGCACAGGTCTGGCTGAAACTGCACAATGACCCCA
GAAGCGAGCTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAGAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCACCT
GGAATATGCGCCCCGCCCCACAGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B2B3R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.829

100

0.609

Multiple sequence alignment