Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   D5S12_RS02395 Genome accession   NZ_CP032459
Coordinates   517776..518186 (+) Length   136 a.a.
NCBI ID   WP_003366149.1    Uniprot ID   A0A8T8LZ67
Organism   Pseudomonas syringae strain CAS02     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 512776..523186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S12_RS02370 (D5S12_02555) pyrR 513658..514170 (-) 513 WP_044308684.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  D5S12_RS02375 (D5S12_02560) ruvX 514405..514845 (-) 441 WP_002551734.1 Holliday junction resolvase RuvX -
  D5S12_RS02380 (D5S12_02565) - 514845..515417 (-) 573 WP_003366147.1 YqgE/AlgH family protein -
  D5S12_RS02385 (D5S12_02570) - 515493..516395 (-) 903 WP_032609252.1 energy transducer TonB -
  D5S12_RS02390 (D5S12_02575) gshB 516562..517521 (-) 960 WP_003316740.1 glutathione synthase -
  D5S12_RS02395 (D5S12_02580) pilG 517776..518186 (+) 411 WP_003366149.1 twitching motility response regulator PilG Regulator
  D5S12_RS02400 (D5S12_02585) pilH 518233..518598 (+) 366 WP_003316741.1 twitching motility response regulator PilH -
  D5S12_RS02405 (D5S12_02590) - 518613..519152 (+) 540 WP_003432055.1 chemotaxis protein CheW -
  D5S12_RS02410 (D5S12_02595) - 519203..521245 (+) 2043 WP_032609251.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14953.46 Da        Isoelectric Point: 8.5283

>NTDB_id=316016 D5S12_RS02395 WP_003366149.1 517776..518186(+) (pilG) [Pseudomonas syringae strain CAS02]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFVAAEQHIP

Nucleotide


Download         Length: 411 bp        

>NTDB_id=316016 D5S12_RS02395 WP_003366149.1 517776..518186(+) (pilG) [Pseudomonas syringae strain CAS02]
ATGGAACAACACGCCTCCGCCCTGAAAGTCATGGTCATCGATGATTCGAAGACCATCCGCCGCACCGCCGAAACACTGCT
CAAGAACGCAGGCTGTGAAGTCATCACTGCGATAGACGGTTTCGACGCGCTGGCCAAGATTGCCGATAACCACCCGCGAA
TCATATTCGTCGATATCATGATGCCGCGTCTGGACGGTTATCAGACCTGCGCGCTGATCAAGAACAACCGGGCATTCAAG
TCGACGCCGGTCATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCAGCGCGATCAAGGCTCATGTGCCGGGCTTCGTTGCAGCAGAACAAC
ACATACCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

91.912

0.691

Multiple sequence alignment