Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D4Z81_RS07220 Genome accession   NZ_CP032451
Coordinates   1350198..1351574 (+) Length   458 a.a.
NCBI ID   WP_003618262.1    Uniprot ID   Q1G8W1
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.0207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345198..1356574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4Z81_RS07190 (D4Z81_07190) fabZ 1345952..1346413 (+) 462 WP_003618306.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D4Z81_RS07195 (D4Z81_07195) - 1346526..1347461 (+) 936 WP_011544168.1 AAA family ATPase -
  D4Z81_RS10620 - 1347568..1347750 (+) 183 WP_240534075.1 hypothetical protein -
  D4Z81_RS07205 (D4Z81_07205) pepC 1347816..1349165 (-) 1350 WP_035170321.1 aminopeptidase C -
  D4Z81_RS07210 (D4Z81_07210) - 1349250..1349537 (-) 288 WP_003618267.1 hypothetical protein -
  D4Z81_RS07215 (D4Z81_07215) - 1349644..1350198 (+) 555 WP_003612504.1 dUTP diphosphatase -
  D4Z81_RS07220 (D4Z81_07220) radA 1350198..1351574 (+) 1377 WP_003618262.1 DNA repair protein RadA Machinery gene
  D4Z81_RS07225 (D4Z81_07225) - 1351684..1352631 (+) 948 WP_003618260.1 glycosyltransferase family 8 protein -
  D4Z81_RS07235 (D4Z81_07235) - 1352904..1354067 (+) 1164 Protein_1366 EAL domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50037.51 Da        Isoelectric Point: 6.6143

>NTDB_id=315976 D4Z81_RS07220 WP_003618262.1 1350198..1351574(+) (radA) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.0207]
MARARTQYKCRSCGYISASYLGRCPNCGAWNQFEKESQEVRQTSTKATPSRLMASVGAKEAVKMSTVKAEKEERVLTKSS
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQIKLRADRLGLGQSPMLLYPESNMEHI
RDQIDDVKPDFVVIDSIQTMNEPSLDSMVGSASQVREVTAELMKIAKLDQVTVFVIGHVTKEGSIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMKTEGLAEVTNPSAVFLDERLPDSTGSAVVVSLEGTRPILGEIQALVTPTA
FGYAKRTTSGLDYNRVSLLLAVLEKRGNLMLQNQDAYLSATGGIRLNEPAIDLAIAMAIASSYYDKEISATDCFVGEIGL
TGEVRRVNQIQARVKEAGKVGFKRIFIPKYNMSPALQDLGIEVIPVSSVRQALHYLFS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=315976 D4Z81_RS07220 WP_003618262.1 1350198..1351574(+) (radA) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.0207]
ATGGCCAGAGCTAGAACCCAGTATAAGTGCCGGTCTTGCGGCTACATCTCCGCTTCTTACCTGGGCCGGTGCCCGAACTG
CGGGGCCTGGAACCAGTTTGAAAAAGAAAGCCAGGAGGTCCGCCAGACTTCTACTAAAGCTACCCCCAGCCGCCTGATGG
CCAGCGTGGGTGCTAAAGAAGCCGTTAAAATGTCCACCGTCAAGGCGGAAAAAGAAGAGCGGGTCTTAACCAAGTCCTCT
GAACTTAACCGGGTCTTAGGCGGCGGGATCGTACCAGGCTCTTTGGTCTTGATTGGCGGGGACCCCGGCATCGGCAAGTC
CACTTTGATGCTGCAGATCATGAGCGAACTGGCCGAAAAATACAAGGTCCTCTACGTCTCCGGGGAAGAATCTGCCAGCC
AGATCAAGCTGCGGGCTGACCGCTTAGGCCTGGGCCAAAGCCCCATGCTTTTATATCCGGAAAGCAACATGGAACACATC
CGCGACCAGATCGACGACGTTAAGCCAGATTTTGTCGTGATCGACTCCATCCAGACCATGAATGAACCCAGCCTGGACTC
CATGGTGGGCTCAGCTTCCCAGGTCCGGGAAGTTACCGCCGAATTGATGAAGATCGCCAAGCTGGACCAGGTCACTGTCT
TTGTCATCGGCCACGTGACCAAGGAAGGGTCCATCGCCGGGCCGAAAATCCTGGAGCACATGGTTGATACCGTCCTTTAC
TTTGAAGGTGACGAGCACCATGCCTACCGGATCCTGCACTCAGTCAAGAACCGTTTTGGGGCGGCCAACGAAATCGGCAT
GTTTGAAATGAAGACCGAAGGCCTGGCAGAAGTGACCAATCCTTCCGCTGTCTTCTTAGATGAACGCTTGCCCGACTCAA
CTGGGTCAGCCGTGGTCGTTTCTTTAGAAGGCACCCGGCCGATCTTGGGCGAAATCCAGGCCCTGGTCACCCCAACCGCC
TTCGGCTATGCCAAGCGGACTACTTCGGGCCTGGACTACAACCGGGTCTCCCTGCTTTTAGCCGTTTTGGAAAAAAGGGG
GAACCTAATGCTGCAGAACCAGGACGCCTATTTATCAGCGACCGGCGGCATCCGCTTAAACGAACCGGCCATTGACCTGG
CCATCGCCATGGCCATTGCCTCCAGTTACTATGACAAGGAAATCTCCGCAACTGACTGCTTTGTCGGGGAAATCGGCCTG
ACTGGGGAAGTCCGCCGGGTCAACCAGATCCAGGCCCGGGTCAAGGAAGCCGGCAAGGTTGGCTTCAAGCGGATTTTTAT
CCCGAAATACAATATGAGCCCGGCCTTGCAGGATTTGGGGATTGAGGTAATTCCGGTCTCCAGCGTCCGCCAGGCCCTCC
ACTACCTTTTCTCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1G8W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

56.332

100

0.563
  radA Streptococcus mitis NCTC 12261

56.332

100

0.563
  radA Streptococcus pneumoniae Rx1

56.332

100

0.563
  radA Streptococcus pneumoniae D39

56.332

100

0.563
  radA Streptococcus pneumoniae R6

56.332

100

0.563
  radA Streptococcus pneumoniae TIGR4

56.332

100

0.563
  radA Bacillus subtilis subsp. subtilis str. 168

55.604

99.345

0.552

Multiple sequence alignment