Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E5M00_RS10165 Genome accession   NZ_CP038791
Coordinates   2068542..2069969 (-) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli strain PF9285     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063542..2074969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5M00_RS10135 (E5M00_10135) yeeZ 2063597..2064421 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E5M00_RS10140 (E5M00_10140) yeeY 2064467..2065396 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  E5M00_RS10145 (E5M00_10145) yoeI 2065611..2065673 (+) 63 WP_010723108.1 membrane protein YoeI -
  E5M00_RS10150 (E5M00_10150) plaP 2065663..2067021 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E5M00_RS10155 (E5M00_10155) tsuA 2067200..2068258 (+) 1059 WP_032223502.1 thiosulfate utilization transporter TsuA/YeeE -
  E5M00_RS10160 (E5M00_10160) tsuB 2068272..2068499 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E5M00_RS10165 (E5M00_10165) sbcB 2068542..2069969 (-) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  E5M00_RS10170 (E5M00_10170) dacD 2070158..2071324 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E5M00_RS10175 (E5M00_10175) sbmC 2071443..2071916 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  E5M00_RS10180 (E5M00_10180) yeeA 2072115..2073173 (+) 1059 WP_001200891.1 FUSC family protein -
  E5M00_RS10185 (E5M00_10185) tmaR 2073345..2073674 (+) 330 WP_000450409.1 DUF496 family protein -
  E5M00_RS28375 (E5M00_10190) - 2073775..2073957 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  E5M00_RS27935 - 2074077..2074157 (+) 81 WP_023441679.1 hypothetical protein -
  E5M00_RS10200 (E5M00_10200) - 2074446..2074526 (-) 81 Protein_1964 hypothetical protein -
  E5M00_RS10205 (E5M00_10205) yeeW 2074572..2074766 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=315784 E5M00_RS10165 WP_000980612.1 2068542..2069969(-) (sbcB) [Escherichia coli strain PF9285]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=315784 E5M00_RS10165 WP_000980612.1 2068542..2069969(-) (sbcB) [Escherichia coli strain PF9285]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment