Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   TFGB2_RS00665 Genome accession   NZ_CP032429
Coordinates   105928..106527 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain TFG-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100928..111527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGB2_RS00650 (TFGB2_00090) pilQ 102503..104698 (-) 2196 WP_047952351.1 type IV pilus secretin PilQ Machinery gene
  TFGB2_RS00655 (TFGB2_00091) pilP 104717..105262 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  TFGB2_RS00660 (TFGB2_00092) - 105280..105927 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  TFGB2_RS00665 (TFGB2_00093) pilN 105928..106527 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  TFGB2_RS00670 (TFGB2_00094) pilM 106530..107645 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  TFGB2_RS00675 (TFGB2_00095) - 107797..110193 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  TFGB2_RS00680 (TFGB2_00096) yihA 110313..110942 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=315756 TFGB2_RS00665 WP_003687354.1 105928..106527(-) (pilN) [Neisseria gonorrhoeae strain TFG-B2]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=315756 TFGB2_RS00665 WP_003687354.1 105928..106527(-) (pilN) [Neisseria gonorrhoeae strain TFG-B2]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment