Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7V21_RS16355 Genome accession   NZ_CP032426
Coordinates   3075483..3076112 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCEC020001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070483..3081112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V21_RS16340 (C7V21_16405) helD 3070725..3072779 (-) 2055 WP_000420536.1 DNA helicase IV -
  C7V21_RS16345 (C7V21_16410) yccF 3072902..3073348 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C7V21_RS16350 (C7V21_16415) yccS 3073358..3075520 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C7V21_RS16355 (C7V21_16420) sxy/tfoX 3075483..3076112 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7V21_RS16360 (C7V21_16425) sulA 3076331..3076840 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7V21_RS16365 (C7V21_16435) ompA 3077197..3078249 (+) 1053 WP_001361736.1 porin OmpA -
  C7V21_RS16370 (C7V21_16440) matP 3078325..3078777 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C7V21_RS16375 (C7V21_16445) ycbZ 3078963..3080723 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=315735 C7V21_RS16355 WP_000839153.1 3075483..3076112(-) (sxy/tfoX) [Escherichia coli strain SCEC020001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=315735 C7V21_RS16355 WP_000839153.1 3075483..3076112(-) (sxy/tfoX) [Escherichia coli strain SCEC020001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment