Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D3880_RS19205 Genome accession   NZ_CP032419
Coordinates   4220915..4222276 (-) Length   453 a.a.
NCBI ID   WP_119895015.1    Uniprot ID   A0A385Z9K4
Organism   Pseudomonas cavernae strain K2W31S-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4215915..4227276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3880_RS19180 (D3880_19185) - 4216945..4217142 (-) 198 WP_119895010.1 YbdD/YjiX family protein -
  D3880_RS19185 (D3880_19190) - 4217200..4219266 (-) 2067 WP_119895011.1 carbon starvation CstA family protein -
  D3880_RS19190 (D3880_19195) - 4219422..4219928 (-) 507 WP_119895012.1 DUF3015 domain-containing protein -
  D3880_RS19195 (D3880_19200) - 4220052..4220513 (+) 462 WP_119895013.1 methyltransferase family protein -
  D3880_RS19200 (D3880_19205) - 4220541..4220909 (+) 369 WP_119895014.1 PilZ domain-containing protein -
  D3880_RS19205 (D3880_19210) radA 4220915..4222276 (-) 1362 WP_119895015.1 DNA repair protein RadA Machinery gene
  D3880_RS19210 (D3880_19215) - 4222289..4222573 (-) 285 WP_119895016.1 DUF465 domain-containing protein -
  D3880_RS19215 (D3880_19220) - 4222665..4222907 (-) 243 WP_119895017.1 YdcH family protein -
  D3880_RS19220 (D3880_19225) mscL 4223111..4223512 (+) 402 WP_119895018.1 large-conductance mechanosensitive channel protein MscL -
  D3880_RS19225 (D3880_19230) - 4223568..4224344 (-) 777 WP_119895019.1 ferredoxin--NADP reductase -
  D3880_RS19230 (D3880_19235) - 4224408..4225532 (+) 1125 WP_119895020.1 methyltransferase -
  D3880_RS19235 (D3880_19240) - 4225694..4225834 (-) 141 WP_119895021.1 DUF2474 domain-containing protein -
  D3880_RS19240 (D3880_19245) cydB 4225834..4226841 (-) 1008 WP_119895022.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48502.98 Da        Isoelectric Point: 6.8985

>NTDB_id=315713 D3880_RS19205 WP_119895015.1 4220915..4222276(-) (radA) [Pseudomonas cavernae strain K2W31S-8]
MAKAKRIYGCTECGATFPKWAGQCAECGAWNTLVESIEPAGESANGRLGWAGQQAQIKTLAQVSVEEMPRFSTASAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRLPALYVTGEESQQQVAMRARRLGLPEDQLKVMTETCIEAIIATA
RVEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDRGLKEVSNPSAIFLTRAQAEVPGSVVMATWEGTRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPSGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=315713 D3880_RS19205 WP_119895015.1 4220915..4222276(-) (radA) [Pseudomonas cavernae strain K2W31S-8]
ATGGCCAAGGCCAAGCGCATCTATGGCTGCACGGAGTGCGGCGCGACGTTCCCCAAGTGGGCTGGACAATGCGCAGAATG
CGGGGCCTGGAACACCCTGGTGGAGAGTATCGAGCCCGCTGGCGAGAGCGCCAATGGCCGGCTCGGCTGGGCTGGGCAAC
AGGCGCAGATCAAGACCCTGGCGCAAGTCAGCGTCGAGGAGATGCCACGCTTCTCCACCGCCTCGGCGGAGCTCGACCGG
GTGCTCGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCATCCTCCT
GCAGACCCTGTGCAACATCGCCACGCGCCTGCCGGCGCTGTACGTCACCGGTGAGGAATCGCAGCAGCAGGTGGCCATGC
GCGCCCGCCGCCTGGGCCTACCGGAAGACCAACTGAAGGTGATGACCGAGACCTGCATCGAGGCCATCATCGCCACCGCC
CGCGTCGAACAGCCCAAGGTCATGGTAATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAGTCCGCCCCCGGCGG
CGTCGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGTACGGCGATCTTCCTGGTCGGCC
ACGTCACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTCGAACACATGGTCGACACCGTGCTGTATTTCGAGGGCGAA
TCGGACGGCCGTTTGCGCCTGCTGCGCGCGGTGAAGAATCGCTTCGGCGCGATCAATGAACTCGGCGTGTTCGGCATGAC
CGACCGTGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGCGGAAGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCACTGGTCGACACCAGCCACCTGGCCAACCCA
CGGCGCGTCACCCTCGGTCTCGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGTTGCACCGGCACGGCGGCATCCCCAC
CCATGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCGGACCTGGCCTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAATCGGCCGCTACCCCATGACCTGCTGGTGTTCGGCGAGGTCGGCCTGTCCGGCGAGGTG
CGCCCGGTGCCGAGTGGTCAGGAGCGTCTGAAGGAGGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAAGGGCAA
CGCGCCGAAGGAGTCCCCGAGCGGGCTGCAGGTGATTGCGGTGACGCGCCTGGAGCAGGCGCTGGATGCGCTGTTCGAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385Z9K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.227

100

0.492
  radA Streptococcus pneumoniae Rx1

47.137

100

0.472
  radA Streptococcus pneumoniae D39

47.137

100

0.472
  radA Streptococcus pneumoniae R6

47.137

100

0.472
  radA Streptococcus pneumoniae TIGR4

47.137

100

0.472
  radA Streptococcus mitis SK321

47.137

100

0.472
  radA Streptococcus mitis NCTC 12261

46.916

100

0.47

Multiple sequence alignment