Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D3873_RS06420 Genome accession   NZ_CP032418
Coordinates   1280886..1282577 (-) Length   563 a.a.
NCBI ID   WP_119883276.1    Uniprot ID   A0A385YSC8
Organism   Paenisporosarcina cavernae strain K2R23-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275886..1287577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3873_RS06400 (D3873_06400) - 1276216..1276944 (-) 729 WP_119883272.1 glycerophosphodiester phosphodiesterase -
  D3873_RS06405 (D3873_06405) - 1276937..1278508 (-) 1572 WP_119883273.1 DUF342 domain-containing protein -
  D3873_RS06410 (D3873_06410) spo0A 1278734..1279525 (-) 792 WP_119883274.1 sporulation transcription factor Spo0A -
  D3873_RS06415 (D3873_06415) - 1279892..1280839 (-) 948 WP_119883275.1 SpoIVB peptidase S55 domain-containing protein -
  D3873_RS06420 (D3873_06420) recN 1280886..1282577 (-) 1692 WP_119883276.1 DNA repair protein RecN Machinery gene
  D3873_RS06425 (D3873_06425) ahrC 1282594..1283043 (-) 450 WP_119883277.1 transcriptional regulator AhrC/ArgR -
  D3873_RS06430 (D3873_06430) - 1283199..1284023 (-) 825 WP_119883278.1 TlyA family RNA methyltransferase -
  D3873_RS06435 (D3873_06435) dxs 1284020..1285924 (-) 1905 WP_119883279.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D3873_RS06440 (D3873_06440) - 1286017..1286901 (-) 885 WP_238473749.1 polyprenyl synthetase family protein -
  D3873_RS06445 (D3873_06445) - 1286898..1287143 (-) 246 WP_119883280.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63301.97 Da        Isoelectric Point: 4.9933

>NTDB_id=315675 D3873_RS06420 WP_119883276.1 1280886..1282577(-) (recN) [Paenisporosarcina cavernae strain K2R23-3]
MLKELSVKNFAIIENLHVSFQTGMTVLSGETGAGKSIIIDAVTLLCGGRGSTEFIRHGAPKAELEGLFDVEDATIELKTI
LDDHGLEIEEELLILRRDIALSGKSICRINGKLVPLSILREIGSHLIDIHGQHESQELMEEKNHLPLLDSYGGEKIISLK
NHYYVLYQRYTKLVSASKKATENEQVRAQKMDLYSFQLNEIDALQLVVGEDEKLAELRKQGVNHQKIVEKLANSYTSIQE
EGHGLDWIGKAMSDMNEISDIHPTYAELAETISSAFYSLQDVSYAIKDAMDSLEINEEELIAADERLEAINQVKRKYGHT
VEEVLDYRDRVEEKWLALKNHDENLQQSQLEIEKLEKDMQDISTELTIIRKKLALNLKSDIEEQLKDLYMEKATFTAHIE
SAEAFRKDGKDQISFYLSPNNGEPEKPVAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDSGVSGRVAQAIAEKIAK
ISIGSQVLCISHLPQVAAMADHHYVIQKESVENRTVTSLKEVTSHKRVEEISRMMSGEKVTDTTLRHASELIEMAETRKN
YLS

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=315675 D3873_RS06420 WP_119883276.1 1280886..1282577(-) (recN) [Paenisporosarcina cavernae strain K2R23-3]
ATGTTAAAAGAATTATCGGTTAAAAATTTTGCAATTATCGAAAATTTACATGTCTCATTTCAAACAGGTATGACGGTTTT
AAGTGGTGAAACTGGCGCAGGAAAATCGATTATTATTGATGCTGTCACCTTACTTTGTGGCGGGAGAGGATCGACAGAGT
TTATTCGCCACGGCGCTCCTAAAGCAGAACTAGAAGGCCTTTTTGATGTAGAAGATGCCACAATCGAACTGAAAACTATT
TTAGATGATCATGGCTTAGAGATAGAAGAAGAGTTGCTCATCTTACGAAGAGACATCGCACTATCTGGAAAAAGTATTTG
TCGTATTAATGGGAAATTAGTTCCTTTAAGTATTTTACGTGAAATTGGTAGTCATTTAATTGATATCCATGGACAGCATG
AAAGCCAAGAGCTTATGGAAGAAAAAAATCATTTACCGTTACTTGACTCTTATGGCGGTGAAAAGATTATTTCTTTAAAA
AATCATTACTACGTTCTTTATCAAAGGTATACAAAACTAGTAAGTGCTTCCAAAAAAGCTACCGAAAACGAACAAGTACG
TGCTCAAAAAATGGACTTGTATTCTTTTCAACTAAATGAAATCGATGCACTTCAACTTGTTGTAGGGGAAGATGAAAAGT
TAGCTGAACTCCGTAAACAGGGAGTGAACCACCAAAAAATAGTGGAAAAATTAGCAAATAGTTATACCAGTATTCAAGAG
GAAGGTCATGGGCTTGATTGGATTGGCAAAGCAATGAGTGACATGAATGAAATAAGTGATATTCATCCAACATACGCTGA
ACTAGCAGAAACGATCTCATCTGCTTTCTATTCGCTTCAAGATGTCAGTTATGCTATAAAAGATGCGATGGATTCATTAG
AAATTAATGAAGAAGAATTAATTGCAGCTGACGAACGTCTCGAAGCAATTAATCAAGTGAAAAGAAAATATGGTCATACG
GTAGAGGAAGTCTTGGATTATCGAGATCGCGTGGAAGAAAAATGGCTCGCTTTAAAAAATCATGATGAAAATTTACAGCA
ATCACAACTAGAAATAGAGAAACTTGAAAAAGACATGCAGGATATTTCGACTGAATTAACGATCATTCGGAAAAAGCTTG
CTCTCAATTTAAAGTCTGATATTGAAGAGCAGCTGAAAGATTTATACATGGAAAAAGCAACTTTTACTGCACACATTGAG
AGTGCGGAAGCATTTCGAAAAGATGGAAAAGATCAAATATCTTTTTACCTTTCTCCAAACAACGGAGAACCCGAAAAACC
GGTGGCAAAAATTGCATCAGGTGGAGAATTATCACGCATTATGCTTGCGCTTAAATCGATATTTAGTAAGCATCAAGGTG
TCACTTCAATCATTTTCGATGAGGTAGACAGTGGAGTAAGCGGACGAGTTGCACAAGCAATCGCAGAAAAAATTGCGAAG
ATATCCATTGGCTCTCAAGTGCTATGTATTTCCCATTTGCCACAAGTAGCTGCTATGGCAGATCATCACTATGTAATTCA
GAAAGAATCTGTAGAAAATCGGACGGTTACGTCATTAAAAGAAGTAACTTCTCATAAACGAGTGGAAGAAATAAGTAGAA
TGATGTCTGGTGAAAAAGTGACTGATACGACATTACGACATGCCTCTGAACTGATTGAGATGGCGGAAACTCGAAAAAAT
TACCTTTCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385YSC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.739

100

0.508

Multiple sequence alignment