Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   E5D09_RS13015 Genome accession   NZ_CP038644
Coordinates   2684803..2685318 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain ACN21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2679803..2690318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5D09_RS12990 (E5D09_12990) - 2680349..2681992 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  E5D09_RS12995 (E5D09_12995) - 2681985..2682470 (+) 486 WP_000935252.1 DUF934 domain-containing protein -
  E5D09_RS13000 (E5D09_13000) - 2682553..2682906 (+) 354 WP_000457783.1 DMT family transporter -
  E5D09_RS13005 (E5D09_13005) - 2682949..2683392 (-) 444 WP_001176580.1 VOC family protein -
  E5D09_RS13010 (E5D09_13010) - 2683519..2684694 (-) 1176 WP_029424634.1 thiolase family protein -
  E5D09_RS13015 (E5D09_13015) fimT 2684803..2685318 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  E5D09_RS13020 (E5D09_13020) omp38 2685700..2686770 (+) 1071 WP_000777880.1 outer membrane protein Omp38 -
  E5D09_RS19640 - 2686895..2687038 (-) 144 WP_162138624.1 hypothetical protein -
  E5D09_RS13025 (E5D09_13025) - 2687057..2688262 (-) 1206 WP_000512696.1 RtcB family protein -
  E5D09_RS13030 (E5D09_13030) - 2688539..2689999 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=315673 E5D09_RS13015 WP_000477151.1 2684803..2685318(-) (fimT) [Acinetobacter baumannii strain ACN21]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=315673 E5D09_RS13015 WP_000477151.1 2684803..2685318(-) (fimT) [Acinetobacter baumannii strain ACN21]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427