Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D3873_RS00590 Genome accession   NZ_CP032418
Coordinates   109260..111047 (+) Length   595 a.a.
NCBI ID   WP_119882184.1    Uniprot ID   A0A385YP40
Organism   Paenisporosarcina cavernae strain K2R23-3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 104260..116047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3873_RS00575 (D3873_00575) helD 104367..106667 (+) 2301 WP_119882181.1 RNA polymerase recycling motor HelD -
  D3873_RS00580 (D3873_00580) - 107022..107444 (+) 423 WP_119882182.1 MarR family winged helix-turn-helix transcriptional regulator -
  D3873_RS00585 (D3873_00585) rcrP 107513..109267 (+) 1755 WP_119882183.1 ABC transporter ATP-binding protein Regulator
  D3873_RS00590 (D3873_00590) rcrQ 109260..111047 (+) 1788 WP_119882184.1 ABC transporter ATP-binding protein Regulator
  D3873_RS00595 (D3873_00595) - 111594..113504 (+) 1911 WP_119882185.1 PhoX family protein -
  D3873_RS00600 (D3873_00600) - 113638..114081 (+) 444 WP_238473798.1 GNAT family N-acetyltransferase -
  D3873_RS00605 (D3873_00605) trpA 114091..114885 (-) 795 WP_119882186.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66129.95 Da        Isoelectric Point: 4.9666

>NTDB_id=315661 D3873_RS00590 WP_119882184.1 109260..111047(+) (rcrQ) [Paenisporosarcina cavernae strain K2R23-3]
MARKKRSKPDKQQTNFKEPMLRLLAYCRDYLAWIITALVLAMAGAIFNIIGPELLREITDLITEGLGSSIDLDAVMRVAV
ILASLYVLGFVFNYLQGFIMATVTQRVSKKLRTNISGKINRLPLRYFDRNSTGDVLSRVTNDVDLISQTMNQSLSSLVAA
GTMFLGSLIMMFYTNWIMAISAVLSTIIGFGLMTAIIAKSQKFFRQQQQELGNINGQIEEIYTGHTTVKAYNGENLATDD
FNAINTRLYDSAWKSQFISGLMMPLMMFVGNFGYVVVSVVGAVLATNGKISFGVIVAFMLYIRLFTQPLSQLAQVATNLQ
GTAAASERVFEFLHEEELEVEHQKTTQLTPENVRGDIAFHHVQFGYEPESNVIQDFSFEAKAGQKVAIVGPTGAGKTTLI
NLLMRFYEVTDGEILIDGVPTSAITRDNLHELFCMVLQDTWLFEGTIRDNIKYNQQNVTDEDVEAACRAVGLHHFIHTLP
NGYDTILDDQANLSAGQKQLITIARAMVEDAPFLILDEATSSVDTRTEVLIQQAMDRLTVGKTSFVIAHRLSTIKNADVI
LVMRDGDVVESGTHDELLAQNGFYADLYNSQFDVA

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=315661 D3873_RS00590 WP_119882184.1 109260..111047(+) (rcrQ) [Paenisporosarcina cavernae strain K2R23-3]
ATGGCTAGAAAAAAACGAAGCAAACCCGATAAACAACAAACCAATTTTAAAGAGCCGATGCTTCGACTTCTTGCGTATTG
CCGGGACTACTTAGCTTGGATCATCACTGCACTTGTACTGGCAATGGCGGGAGCGATATTTAATATTATCGGACCTGAAT
TACTCCGTGAAATTACCGATTTAATCACAGAAGGTTTGGGTTCGTCGATCGATTTAGATGCGGTGATGCGCGTTGCGGTT
ATTTTAGCGAGCTTGTATGTGCTTGGTTTTGTGTTCAACTATTTACAAGGCTTTATCATGGCGACCGTCACGCAGCGAGT
ATCCAAAAAGTTGCGAACGAATATCTCTGGAAAAATTAATCGCCTACCCCTTCGTTATTTCGACCGGAATAGCACTGGGG
ATGTGTTGAGTCGCGTCACGAATGACGTCGATTTAATCAGTCAAACCATGAACCAAAGCTTGAGTTCACTCGTGGCAGCT
GGCACGATGTTTCTTGGATCACTCATTATGATGTTCTATACAAACTGGATTATGGCAATTTCTGCCGTATTGTCGACTAT
TATTGGGTTTGGATTAATGACGGCAATTATTGCGAAATCCCAGAAGTTTTTCCGTCAACAGCAGCAAGAGCTCGGAAATA
TTAATGGACAAATTGAAGAAATTTATACTGGTCACACAACAGTAAAAGCATACAATGGGGAAAACCTAGCAACAGATGAT
TTTAATGCGATCAACACGCGACTATATGACAGTGCCTGGAAATCGCAATTCATTTCTGGGTTAATGATGCCTCTTATGAT
GTTTGTCGGAAACTTCGGCTATGTTGTCGTCAGTGTTGTCGGTGCCGTTCTTGCGACAAATGGCAAAATCTCCTTTGGGG
TCATCGTTGCCTTTATGCTATACATCCGCTTATTTACACAACCGCTTTCTCAGCTAGCTCAAGTAGCAACCAATTTACAA
GGGACAGCTGCTGCAAGTGAACGTGTATTTGAGTTCTTACATGAAGAAGAATTAGAAGTTGAACACCAAAAAACAACGCA
ACTTACACCAGAAAATGTACGAGGAGATATCGCATTCCATCATGTGCAATTTGGTTATGAACCGGAATCGAACGTCATCC
AAGATTTTTCATTCGAAGCAAAAGCGGGTCAAAAAGTAGCAATAGTTGGTCCTACGGGAGCAGGGAAAACCACGCTGATC
AATTTACTCATGCGCTTTTATGAAGTGACAGATGGGGAAATTTTGATCGATGGCGTGCCAACGAGTGCCATTACACGAGA
TAATTTGCATGAATTATTCTGTATGGTGCTGCAAGATACTTGGTTGTTTGAAGGGACCATTCGAGACAATATTAAGTACA
ATCAACAAAACGTTACAGATGAAGATGTCGAAGCGGCTTGTCGAGCTGTCGGTCTACACCATTTCATCCATACCTTGCCG
AACGGCTATGACACGATCTTAGACGACCAAGCGAATTTATCCGCAGGTCAAAAACAGTTGATCACGATTGCACGTGCGAT
GGTAGAAGACGCGCCGTTCTTAATCCTCGATGAAGCGACAAGCTCCGTTGATACACGCACAGAAGTGCTCATTCAACAAG
CGATGGACCGTTTAACCGTCGGGAAAACATCATTTGTTATTGCCCACCGACTTTCGACGATCAAAAATGCAGATGTCATT
TTAGTCATGCGAGACGGAGATGTGGTCGAAAGTGGCACACACGACGAACTATTAGCGCAAAACGGTTTCTACGCTGATTT
GTATAATAGTCAATTTGATGTCGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-309)

ABC transporter (ABC_tran)

(374-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385YP40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.168

97.311

0.556

Multiple sequence alignment