Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D5F53_RS08750 Genome accession   NZ_CP032412
Coordinates   1846867..1847820 (+) Length   317 a.a.
NCBI ID   WP_119847376.1    Uniprot ID   A0A385TI71
Organism   Paenibacillus lautus strain E7593-69     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1841867..1852820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5F53_RS08725 (D5F53_08725) - 1842906..1843628 (-) 723 WP_119847373.1 class I SAM-dependent methyltransferase -
  D5F53_RS08730 (D5F53_08730) - 1843771..1844469 (+) 699 WP_119847374.1 nucleotidyltransferase domain-containing protein -
  D5F53_RS08735 (D5F53_08735) - 1844596..1844691 (+) 96 WP_015736424.1 hypothetical protein -
  D5F53_RS08740 (D5F53_08740) - 1844766..1845368 (-) 603 WP_119847375.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  D5F53_RS08745 (D5F53_08745) - 1845744..1846346 (-) 603 WP_009589776.1 nitroreductase family protein -
  D5F53_RS08750 (D5F53_08750) ceuB 1846867..1847820 (+) 954 WP_119847376.1 ABC transporter permease Machinery gene
  D5F53_RS08755 (D5F53_08755) - 1847810..1848757 (+) 948 WP_119847377.1 iron chelate uptake ABC transporter family permease subunit -
  D5F53_RS08760 (D5F53_08760) - 1848754..1849512 (+) 759 WP_009589818.1 ABC transporter ATP-binding protein -
  D5F53_RS08765 (D5F53_08765) - 1849721..1850692 (+) 972 WP_119847378.1 siderophore ABC transporter substrate-binding protein -
  D5F53_RS08770 (D5F53_08770) - 1850878..1852302 (+) 1425 WP_119847379.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.36 Da        Isoelectric Point: 9.9368

>NTDB_id=315592 D5F53_RS08750 WP_119847376.1 1846867..1847820(+) (ceuB) [Paenibacillus lautus strain E7593-69]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYISIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=315592 D5F53_RS08750 WP_119847376.1 1846867..1847820(+) (ceuB) [Paenibacillus lautus strain E7593-69]
ATGAAGATTAGATACTTATTCGCAGCCGTTGTGGTACTCTCCATAATCTCGTTATTTATTGGAGTTAAAGATATTTCGCC
ACTGGAACTGTTCTCGATGACGGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCACGGCTTGTCAGCCTCATAT
TGGCGGGTGTCAGCATGAGTATCTGCGGCTTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTATCGCCGACCACGGCG
GGCACCATGGACTCCGCCAGGTTGGGGATCCTGGTCGCCATGCTCGTCTTTACGACAAGCGGACCGCTGATCAAAATGCT
CGTGGCATTCGTATTCGCGCTAGCAGGAACCTTTATCTTCATGAAGATACTGGACCGGATCAAGTTCAAGGACGCGATCT
TCATCCCGCTGGTAGGGCTTATGTTCGGTAATATCGTCAGTTCGGTCGCGACCTTCTTTGCATACAAATATGATCTTATA
CAGAACATGTCGGCTTGGCTTCAGGGCGATTTCTCCATGATCATGAAGGGCCAATATGAAATGCTCTATATCAGTATTCC
GCTTGTGATTTTGGCCTACCTGTTTGCCAACAAGTTTACGGTAGCCGGCATGGGAGAGGAATTCGCAACCAACCTGGGAC
TTCATTATCGGCGAGTCGTGAACCTCGGACTGGTCATCGTTGCGCTGGTCACGGCTTCCGTTGTGCTGACCGTCGGCGTC
ATTCCGTTCCTCGGTCTGATCATACCTAATATTGTCAGTCTGTACTTAGGGGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTTGGCCGGATCATCATTTATCCCTACGAAATTCCGATTA
GTCTGACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385TI71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.286

99.369

0.539

Multiple sequence alignment