Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SaO268_RS05660 Genome accession   NZ_CP038612
Coordinates   1110773..1111483 (-) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O268     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105773..1116483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO268_RS05620 (SaO268_1039) - 1105926..1107065 (-) 1140 WP_000843605.1 nucleotidyltransferase -
  SaO268_RS05625 (SaO268_1040) - 1107192..1107749 (+) 558 WP_135830969.1 DUF177 domain-containing protein -
  SaO268_RS05635 (SaO268_1041) rpmF 1107829..1108002 (+) 174 WP_000290472.1 50S ribosomal protein L32 -
  SaO268_RS05640 (SaO268_1042) - 1108119..1109504 (-) 1386 WP_135830970.1 recombinase family protein -
  SaO268_RS05645 (SaO268_1043) - 1109557..1109892 (-) 336 WP_001292496.1 hypothetical protein -
  SaO268_RS05650 (SaO268_1044) - 1109894..1110397 (-) 504 WP_000428010.1 hypothetical protein -
  SaO268_RS05655 (SaO268_1045) - 1110433..1110618 (-) 186 WP_000100503.1 hypothetical protein -
  SaO268_RS14810 (SaO268_1046) - 1110615..1110761 (-) 147 WP_001049401.1 hypothetical protein -
  SaO268_RS05660 (SaO268_1047) irvR 1110773..1111483 (-) 711 WP_000094091.1 XRE family transcriptional regulator Regulator
  SaO268_RS05665 (SaO268_1048) - 1111655..1111894 (+) 240 WP_000548577.1 helix-turn-helix transcriptional regulator -
  SaO268_RS05670 (SaO268_1049) - 1111907..1112350 (+) 444 WP_000435360.1 hypothetical protein -
  SaO268_RS05675 (SaO268_1050) - 1112365..1112505 (+) 141 WP_000939495.1 hypothetical protein -
  SaO268_RS05680 (SaO268_1051) - 1112498..1112707 (-) 210 WP_000772137.1 hypothetical protein -
  SaO268_RS05685 (SaO268_1052) - 1112764..1113477 (+) 714 WP_135830971.1 BRO family protein -
  SaO268_RS14965 - 1113490..1113567 (+) 78 Protein_1079 hypothetical protein -
  SaO268_RS05690 (SaO268_1054) - 1113779..1114009 (+) 231 WP_065315818.1 hypothetical protein -
  SaO268_RS05695 (SaO268_1055) - 1113993..1114154 (+) 162 WP_065315819.1 DUF1270 domain-containing protein -
  SaO268_RS05700 (SaO268_1056) - 1114343..1114603 (+) 261 WP_000291093.1 DUF1108 family protein -
  SaO268_RS15115 - 1114619..1114690 (+) 72 Protein_1083 siphovirus superfamily -
  SaO268_RS05710 - 1114735..1114890 (+) 156 Protein_1084 DUF1071 domain-containing protein -
  SaO268_RS05715 (SaO268_1057) ssb 1114932..1115320 (+) 389 Protein_1085 single-stranded DNA-binding protein -
  SaO268_RS05720 (SaO268_1058) - 1115334..1116008 (+) 675 WP_065315820.1 putative HNHc nuclease -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=315554 SaO268_RS05660 WP_000094091.1 1110773..1111483(-) (irvR) [Staphylococcus aureus strain O268]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=315554 SaO268_RS05660 WP_000094091.1 1110773..1111483(-) (irvR) [Staphylococcus aureus strain O268]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373

Multiple sequence alignment