Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   SaO268_RS03970 Genome accession   NZ_CP038612
Coordinates   781722..783503 (+) Length   593 a.a.
NCBI ID   WP_135830957.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 776722..788503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO268_RS03960 (SaO268_0732) ltaS 777616..779556 (+) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  SaO268_RS03965 (SaO268_0733) - 779827..781710 (+) 1884 WP_078061093.1 ABC-F family ATP-binding cassette domain-containing protein -
  SaO268_RS03970 (SaO268_0734) recQ 781722..783503 (+) 1782 WP_135830957.1 DNA helicase RecQ Machinery gene
  SaO268_RS03975 (SaO268_0735) - 783725..784702 (+) 978 WP_000589243.1 ABC transporter ATP-binding protein -
  SaO268_RS03980 (SaO268_0736) - 784695..786209 (+) 1515 WP_000180995.1 ABC transporter permease/substrate-binding protein -
  SaO268_RS03985 (SaO268_0737) hisC 786449..787507 (+) 1059 WP_000663023.1 histidinol-phosphate transaminase -
  SaO268_RS03995 (SaO268_0738) - 787905..788453 (+) 549 WP_000197263.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68197.23 Da        Isoelectric Point: 7.0897

>NTDB_id=315538 SaO268_RS03970 WP_135830957.1 781722..783503(+) (recQ) [Staphylococcus aureus strain O268]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYKNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKKHDEDAGIIYCSTRKQVE
ELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=315538 SaO268_RS03970 WP_135830957.1 781722..783503(+) (recQ) [Staphylococcus aureus strain O268]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTAATATCATTAATGAAAGATCAAGTGGATCAATTAAAAGCGATGGGAATTCAG
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAAAGATTTGAAAACCGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGGCATGATTTCAGACCGAGTTATAAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTATATTGGATTATATTAAAAAACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGTCGTGCAGGTCGTGAT
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGCGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGCTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-178)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

Helicase conserved C-terminal domain (Helicase_C)

(216-320)

RQC domain (RQC)

(400-500)

HRDC domain (HRDC)

(521-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.542

99.494

0.423