Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   D5R92_RS07780 Genome accession   NZ_CP032401
Coordinates   1579533..1580600 (+) Length   355 a.a.
NCBI ID   WP_003100864.1    Uniprot ID   -
Organism   Streptococcus iniae strain GX005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574533..1585600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R92_RS07765 (D5R92_07765) amiA3 1575055..1577034 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  D5R92_RS07770 (D5R92_07770) amiC 1577099..1578598 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  D5R92_RS07775 (D5R92_07775) amiD 1578598..1579524 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  D5R92_RS07780 (D5R92_07780) amiE 1579533..1580600 (+) 1068 WP_003100864.1 ABC transporter ATP-binding protein Regulator
  D5R92_RS07785 (D5R92_07785) amiF 1580593..1581516 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  D5R92_RS07790 (D5R92_07790) - 1581981..1583148 (-) 1168 Protein_1469 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39899.87 Da        Isoelectric Point: 5.9482

>NTDB_id=315519 D5R92_RS07780 WP_003100864.1 1579533..1580600(+) (amiE) [Streptococcus iniae strain GX005]
MENKEIILSAKNVVVEFDVRDRILTAIRDISVDLYEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVAKGSINYRGKELT
ELKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGRQITEVIVKHQKKTKSEAKKLAIDYMNKVGIPEAEKRFDEYPFQYS
GGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIVEY
GTVEDIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMTIDFEENVPRFEINGTHWAKT
WLLHPDAPKVQKPEVIRNLHDKISSKQIYREEGNV

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=315519 D5R92_RS07780 WP_003100864.1 1579533..1580600(+) (amiE) [Streptococcus iniae strain GX005]
ATGGAAAACAAAGAAATTATTTTAAGTGCTAAAAATGTTGTCGTTGAATTTGACGTTCGTGACCGTATTTTGACAGCGAT
TCGTGATATTTCCGTTGATTTATATGAAGGTGAAGTCCTTGCGGTTGTTGGAGAATCTGGTAGTGGAAAATCAGTGTTGA
CCAAAACATTTACGGGGATGTTAGAATCTAACGGTCGTGTTGCCAAGGGTTCAATTAATTACCGCGGTAAAGAATTAACT
GAATTAAAAAATCACAAAGATTGGGAAGGAATCCGTGGTGCTAAAATTGCAACCATATTCCAAGATCCAATGACAAGTTT
GGATCCAATCCAAACTATCGGAAGACAAATTACAGAAGTTATTGTCAAACATCAAAAGAAAACAAAATCAGAAGCTAAAA
AATTGGCCATTGATTACATGAATAAAGTTGGGATTCCAGAAGCAGAAAAACGTTTTGATGAATACCCATTTCAGTATTCG
GGTGGTATGCGCCAACGTATTGTTATTGCAATTGCTCTAGCTTGTCGCCCAGACATCCTTATTTGTGATGAGCCAACAAC
TGCTCTAGATGTAACTATTCAGGCGCAAATTATTGATCTGCTAAAAACGCTCCAAAAAGAATATCAATTCACCATTATTT
TTATTACCCATGATTTAGGCGTAGTAGCAAGTATTGCAACCAATGTTGCAGTTATGTATGCTGGTGAAATTGTTGAGTAT
GGAACTGTTGAAGATATCTTTTATGATCCAAGACATCCATATACTTGGAGTTTGCTTTCAAGTTTGCCACAATTAGCCGA
TGAAAAAGGTGTCTTATTCTCCATTCCAGGAACACCACCATCATTGTATAAACCGATTGTTGGCGATGCATTTGCTCCAA
GATCTCAGTATGCAATGACAATTGATTTTGAAGAGAATGTTCCAAGGTTTGAAATTAATGGGACACATTGGGCAAAGACA
TGGTTGCTTCATCCAGATGCACCAAAAGTGCAAAAGCCAGAAGTCATTCGAAATCTTCATGACAAAATTTCAAGTAAACA
AATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-299)

ABC transporter (ABC_tran)

(28-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.492

100

0.792
  amiE Streptococcus thermophilus LMG 18311

77.933

100

0.786
  amiE Streptococcus thermophilus LMD-9

77.933

100

0.786
  oppD Streptococcus mutans UA159

56.232

97.183

0.546

Multiple sequence alignment