Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DC440_RS19440 Genome accession   NZ_CP038505
Coordinates   3913293..3913898 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 28Eco12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3908293..3918898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DC440_RS19420 (DC440_19420) aes 3908434..3909393 (+) 960 WP_000764314.1 acetyl esterase -
  DC440_RS19425 (DC440_19425) hemH 3909390..3910352 (-) 963 WP_001250117.1 ferrochelatase -
  DC440_RS19430 (DC440_19430) adk 3910484..3911128 (-) 645 WP_001220233.1 adenylate kinase -
  DC440_RS19435 (DC440_19435) htpG 3911309..3913183 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  DC440_RS19440 (DC440_19440) recR 3913293..3913898 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DC440_RS19445 (DC440_19445) ybaB 3913898..3914227 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DC440_RS19450 (DC440_19450) dnaX 3914280..3916211 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  DC440_RS19455 (DC440_19455) apt 3916340..3916891 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DC440_RS19460 (DC440_19460) ybaN 3917044..3917421 (-) 378 WP_001188905.1 DUF454 family protein -
  DC440_RS19465 (DC440_19465) priC 3917491..3918018 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  DC440_RS19470 (DC440_19470) rsmS 3918032..3918196 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=315495 DC440_RS19440 WP_001195025.1 3913293..3913898(-) (recR) [Escherichia coli strain 28Eco12]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=315495 DC440_RS19440 WP_001195025.1 3913293..3913898(-) (recR) [Escherichia coli strain 28Eco12]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment