Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DC440_RS09680 Genome accession   NZ_CP038505
Coordinates   1996516..1997943 (-) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain 28Eco12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1991516..2002943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DC440_RS09650 (DC440_09650) yeeZ 1991571..1992395 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  DC440_RS09655 (DC440_09655) yeeY 1992441..1993370 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  DC440_RS09660 (DC440_09660) yoeI 1993585..1993647 (+) 63 WP_010723108.1 membrane protein YoeI -
  DC440_RS09665 (DC440_09665) plaP 1993637..1994995 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DC440_RS09670 (DC440_09670) tsuA 1995174..1996232 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  DC440_RS09675 (DC440_09675) tsuB 1996246..1996473 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DC440_RS09680 (DC440_09680) sbcB 1996516..1997943 (-) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  DC440_RS09685 (DC440_09685) dacD 1998152..1999318 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DC440_RS09690 (DC440_09690) sbmC 1999437..1999910 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  DC440_RS09695 (DC440_09695) yeeA 2000108..2001166 (+) 1059 WP_001200890.1 FUSC family protein -
  DC440_RS09700 (DC440_09700) tmaR 2001338..2001667 (+) 330 WP_000450409.1 DUF496 family protein -
  DC440_RS09705 (DC440_09705) - 2001768..2001950 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DC440_RS09710 (DC440_09710) - 2002004..2002150 (+) 147 Protein_1880 transposase domain-containing protein -
  DC440_RS09715 (DC440_09715) - 2002439..2002519 (-) 81 Protein_1881 hypothetical protein -
  DC440_RS09720 (DC440_09720) yeeW 2002565..2002759 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=315474 DC440_RS09680 WP_021523141.1 1996516..1997943(-) (sbcB) [Escherichia coli strain 28Eco12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=315474 DC440_RS09680 WP_021523141.1 1996516..1997943(-) (sbcB) [Escherichia coli strain 28Eco12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment