Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   D5R90_RS04860 Genome accession   NZ_CP032400
Coordinates   948322..949095 (-) Length   257 a.a.
NCBI ID   WP_016356271.1    Uniprot ID   A0A3L8GC69
Organism   Streptococcus iniae strain YM011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 943322..954095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R90_RS04840 (D5R90_04840) ychF 943834..944952 (-) 1119 WP_016355730.1 redox-regulated ATPase YchF -
  D5R90_RS04845 (D5R90_04845) - 945181..945378 (-) 198 WP_003100542.1 DUF951 domain-containing protein -
  D5R90_RS04850 (D5R90_04850) dnaN 945440..946576 (-) 1137 WP_003100540.1 DNA polymerase III subunit beta -
  D5R90_RS04855 (D5R90_04855) dnaA 946732..948087 (-) 1356 WP_003100539.1 chromosomal replication initiator protein DnaA -
  D5R90_RS04860 (D5R90_04860) spo0J 948322..949095 (-) 774 WP_016356271.1 ParB/RepB/Spo0J family partition protein Regulator
  D5R90_RS04865 (D5R90_04865) htrA 949174..950376 (-) 1203 WP_016356270.1 S1C family serine protease Regulator
  D5R90_RS04870 (D5R90_04870) - 950528..951703 (-) 1176 WP_003099060.1 IS256 family transposase -
  D5R90_RS04875 (D5R90_04875) rlmH 951844..952323 (+) 480 WP_003100536.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  D5R90_RS10285 - 952667..952783 (+) 117 Protein_912 IS30 family transposase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29021.40 Da        Isoelectric Point: 9.9391

>NTDB_id=315440 D5R90_RS04860 WP_016356271.1 948322..949095(-) (spo0J) [Streptococcus iniae strain YM011]
MTETYKKIAIKDIVANPYQPRLHFNEDELKELAASISLNGLIQPIIVRKSEVFGYELIAGERRLRASQIAGLTEIPAIIK
TISNSESMNQAIIENLQRSNLNPIEEAKAFQSIIDKNQLTHDQLAAYMGKSRPYITNTIRLLQLSTSVLDAIEKKTISSG
HARSLLALSTKEEQDKYLNYIISQNLNVRQTESLIRKSKVKKEKKKEKTLFTKAIENELAKSLGLAVSISLNKDGSGQCH
FTFHNDDELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=315440 D5R90_RS04860 WP_016356271.1 948322..949095(-) (spo0J) [Streptococcus iniae strain YM011]
ATGACAGAAACATATAAAAAAATAGCCATTAAAGATATTGTTGCTAATCCTTATCAACCAAGATTACATTTTAATGAAGA
TGAGTTAAAAGAATTAGCAGCATCAATTTCTTTAAATGGTTTAATTCAGCCAATTATCGTCCGTAAATCTGAAGTCTTTG
GTTATGAATTAATTGCTGGTGAAAGAAGATTAAGAGCTTCTCAAATAGCAGGTTTAACTGAAATACCTGCTATTATCAAA
ACTATTTCTAATAGTGAGAGTATGAATCAAGCTATTATTGAAAATTTACAACGTTCCAATTTAAATCCAATAGAAGAAGC
TAAAGCTTTTCAAAGTATTATTGATAAAAATCAATTAACCCATGATCAATTAGCAGCATATATGGGGAAATCTAGACCTT
ATATTACAAATACAATTAGACTCTTACAATTATCCACATCTGTTCTAGATGCCATTGAAAAAAAGACAATAAGTTCTGGC
CACGCACGCAGCCTTCTAGCACTCTCAACTAAGGAAGAACAAGATAAATATCTTAATTATATTATCAGTCAAAACTTAAA
TGTTCGACAAACAGAATCTCTTATTCGAAAGAGTAAGGTTAAAAAAGAAAAGAAAAAAGAAAAGACACTTTTTACAAAAG
CTATTGAAAATGAGCTTGCTAAATCACTTGGACTAGCAGTTTCAATTTCCTTAAACAAAGATGGTAGTGGGCAGTGTCAT
TTTACTTTTCACAACGACGACGAATTAAACAGAATTATCAATAAGCTAAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(147-197)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GC69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.25

99.611

0.56

Multiple sequence alignment