Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DC440_RS00325 Genome accession   NZ_CP038505
Coordinates   73869..74345 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 28Eco12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68869..79345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DC440_RS00285 (DC440_00285) setC 68982..70166 (-) 1185 WP_001172876.1 sugar efflux transporter -
  DC440_RS27215 (DC440_00290) rhuM 70577..70722 (-) 146 Protein_57 RhuM family protein -
  DC440_RS00295 (DC440_00295) - 70960..71802 (-) 843 WP_001274548.1 DUF4942 domain-containing protein -
  DC440_RS00300 (DC440_00300) - 71887..72084 (-) 198 WP_000772035.1 DUF957 domain-containing protein -
  DC440_RS00305 (DC440_00305) - 72096..72587 (-) 492 WP_000976825.1 DUF5983 family protein -
  DC440_RS00310 (DC440_00310) - 72584..72958 (-) 375 WP_000854775.1 TA system toxin CbtA family protein -
  DC440_RS00315 (DC440_00315) - 73048..73416 (-) 369 WP_001285645.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DC440_RS26990 - 73427..73579 (-) 153 WP_001462762.1 hypothetical protein -
  DC440_RS00320 (DC440_00320) - 73579..73800 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DC440_RS00325 (DC440_00325) radC 73869..74345 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  DC440_RS00330 (DC440_00330) - 74361..74840 (-) 480 WP_001550549.1 antirestriction protein -
  DC440_RS00335 (DC440_00335) - 74922..75740 (-) 819 WP_135560405.1 DUF932 domain-containing protein -
  DC440_RS00340 (DC440_00340) - 75830..76063 (-) 234 WP_001278284.1 DUF905 family protein -
  DC440_RS00345 (DC440_00345) - 76069..76746 (-) 678 WP_001097567.1 hypothetical protein -
  DC440_RS00350 (DC440_00350) - 76897..77577 (-) 681 WP_001282911.1 WYL domain-containing protein -
  DC440_RS00355 (DC440_00355) - 77780..78664 (-) 885 WP_000010385.1 YfjP family GTPase -
  DC440_RS00360 (DC440_00360) - 78658..78852 (+) 195 WP_001304548.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=315438 DC440_RS00325 WP_001186726.1 73869..74345(-) (radC) [Escherichia coli strain 28Eco12]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=315438 DC440_RS00325 WP_001186726.1 73869..74345(-) (radC) [Escherichia coli strain 28Eco12]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment