Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   E4664_RS08395 Genome accession   NZ_CP038500
Coordinates   1698792..1699427 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CIAT758     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693792..1704427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4664_RS08370 (E4664_08370) - 1693848..1694828 (-) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  E4664_RS08375 (E4664_08375) kdsB 1694840..1695601 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E4664_RS08380 (E4664_08380) lpxK 1695611..1696621 (-) 1011 WP_000050457.1 tetraacyldisaccharide 4'-kinase -
  E4664_RS08385 (E4664_08385) msbA 1696624..1698351 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  E4664_RS08390 (E4664_08390) - 1698348..1698776 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  E4664_RS08395 (E4664_08395) exbB 1698792..1699427 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E4664_RS08400 (E4664_08400) - 1699477..1700364 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  E4664_RS08405 (E4664_08405) - 1700361..1701143 (-) 783 WP_000057212.1 ParA family protein -
  E4664_RS08410 (E4664_08410) rsmG 1701165..1701797 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  E4664_RS08415 (E4664_08415) murU 1701885..1702574 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  E4664_RS08420 (E4664_08420) - 1702574..1703587 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=315385 E4664_RS08395 WP_000264035.1 1698792..1699427(-) (exbB) [Acinetobacter baumannii strain CIAT758]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=315385 E4664_RS08395 WP_000264035.1 1698792..1699427(-) (exbB) [Acinetobacter baumannii strain CIAT758]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment