Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMO_RS05760 Genome accession   NC_013016
Coordinates   1082590..1083207 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077590..1088207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS05740 (NMO_1045) recD 1078297..1080042 (-) 1746 WP_002259666.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMO_RS05745 (NMO_1046) lolD 1080110..1080805 (-) 696 WP_002259667.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMO_RS05750 (NMO_1047) - 1080798..1082045 (-) 1248 WP_002259668.1 lipoprotein-releasing ABC transporter permease subunit -
  NMO_RS05755 (NMO_1049) - 1082250..1082534 (+) 285 WP_015815600.1 hypothetical protein -
  NMO_RS05760 (NMO_1050) recR 1082590..1083207 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  NMO_RS05765 (NMO_1051) - 1083274..1084812 (-) 1539 WP_002246211.1 SurA N-terminal domain-containing protein -
  NMO_RS05770 (NMO_1052) - 1084872..1085246 (-) 375 WP_002229491.1 arsenate reductase -
  NMO_RS05775 (NMO_1053) - 1085396..1087024 (+) 1629 WP_002241586.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=31538 NMO_RS05760 WP_002217147.1 1082590..1083207(-) (recR) [Neisseria meningitidis alpha14]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=31538 NMO_RS05760 WP_002217147.1 1082590..1083207(-) (recR) [Neisseria meningitidis alpha14]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTTGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment