Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D4L85_RS08330 Genome accession   NZ_CP032382
Coordinates   1928026..1929399 (-) Length   457 a.a.
NCBI ID   WP_119753888.1    Uniprot ID   A0A385SFR8
Organism   Chryseolinea soli strain KIS68-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1923026..1934399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L85_RS08310 (D4L85_08310) lptB 1924622..1925413 (+) 792 WP_119753885.1 LPS export ABC transporter ATP-binding protein -
  D4L85_RS08315 (D4L85_08315) - 1925493..1927016 (+) 1524 WP_119753886.1 GH3 auxin-responsive promoter family protein -
  D4L85_RS08320 (D4L85_08320) - 1927026..1927946 (-) 921 WP_119753887.1 DUF6263 family protein -
  D4L85_RS08330 (D4L85_08330) radA 1928026..1929399 (-) 1374 WP_119753888.1 DNA repair protein RadA Machinery gene
  D4L85_RS08335 (D4L85_08335) - 1929600..1931435 (+) 1836 WP_160143606.1 DUF3857 domain-containing protein -
  D4L85_RS08340 (D4L85_08340) - 1931440..1933350 (+) 1911 WP_119753890.1 DUF3857 domain-containing transglutaminase family protein -
  D4L85_RS08345 (D4L85_08345) - 1933361..1934167 (-) 807 WP_119753891.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50141.76 Da        Isoelectric Point: 5.8355

>NTDB_id=315249 D4L85_RS08330 WP_119753888.1 1928026..1929399(-) (radA) [Chryseolinea soli strain KIS68-18]
MAKTKTTFFCQSCGYESAKWLGKCPSCSAWNTFVEEVITKDEGPKTEWRQESTRSKAIKAKTLNEIESTEEIRIHSIDEE
LNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQVGLLLKKQRVLYVSGEESEQQIKMRAERLGSTSENFYILTETNTKSIFL
AIETVEPDVLIIDSIQTLHSAQLDSTAGSIGQVRQCTGELMKFAKETATPVFLIGHITKDGILAGPKVLEHMVDTVLQFE
GDRHLAYRILRTTKNRFGSTSEIGIYEMLGTGLREVSNPSEILISQKDGPISGVTIGATIEGNRPLLIEIQSLVSPASYG
TPQRTPTGFDQKRLNMLLAVLEKRCGFRMGTQDVFLNMAGGIKVEDPAIDLAVCISIISSMEEISISDKICFAAEVGLGG
ELRAVNKIDQRISEAEKLGFQEIYISKYSQKAIGLKNTKIVVKSFGKLTEVFQDLFG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=315249 D4L85_RS08330 WP_119753888.1 1928026..1929399(-) (radA) [Chryseolinea soli strain KIS68-18]
ATGGCGAAAACTAAAACAACCTTTTTTTGTCAATCCTGTGGCTACGAGTCGGCCAAATGGCTTGGAAAATGTCCTTCGTG
CAGCGCCTGGAACACGTTCGTGGAGGAAGTGATCACAAAAGACGAAGGCCCCAAAACAGAGTGGCGTCAGGAGTCGACGC
GGTCCAAGGCCATAAAGGCAAAGACGCTAAACGAAATTGAATCCACGGAGGAGATCCGCATCCACTCCATCGATGAAGAA
CTAAACCGGGTATTGGGTGGCGGCATTGTTCCGGGATCGCTCGTACTCATCGGAGGCGAGCCTGGTATTGGCAAATCCAC
GCTCATGTTGCAAGTGGGCTTGCTGTTGAAAAAGCAACGGGTGCTCTATGTGTCAGGCGAGGAAAGCGAACAGCAGATCA
AGATGCGCGCCGAACGATTGGGCAGCACATCGGAGAACTTTTATATCCTGACAGAGACCAACACGAAGAGCATTTTTTTA
GCGATCGAAACCGTAGAGCCCGACGTCCTGATCATCGACTCCATTCAAACATTGCATTCGGCACAACTGGATTCCACTGC
CGGCAGCATCGGGCAAGTGCGGCAATGCACGGGCGAGTTGATGAAGTTTGCCAAGGAAACGGCCACGCCCGTATTTCTGA
TCGGTCACATCACGAAAGACGGCATCCTGGCCGGCCCCAAAGTCCTGGAGCACATGGTCGACACCGTACTGCAATTTGAA
GGTGACCGCCATTTGGCCTATCGCATTTTGCGAACGACCAAGAATCGCTTCGGTTCCACGTCGGAGATCGGCATCTATGA
AATGTTGGGCACGGGATTGCGCGAGGTGAGCAATCCTTCCGAAATACTCATATCACAAAAAGACGGACCCATCAGTGGCG
TCACCATTGGTGCAACCATTGAAGGCAACCGGCCCCTGCTCATCGAAATACAATCGCTGGTAAGTCCGGCGTCCTATGGC
ACACCGCAGCGTACGCCTACCGGTTTTGATCAGAAGCGTTTGAACATGCTGCTGGCCGTGCTCGAAAAACGCTGCGGCTT
TCGCATGGGCACACAGGATGTTTTTCTCAACATGGCGGGTGGCATTAAAGTGGAAGACCCGGCCATTGACCTGGCAGTGT
GCATCTCCATCATCTCGTCGATGGAGGAGATCTCCATATCCGATAAAATTTGTTTTGCGGCCGAGGTCGGATTGGGTGGC
GAGCTGCGGGCGGTAAACAAAATTGACCAGCGCATCTCCGAAGCGGAGAAGCTGGGCTTTCAGGAAATCTATATTTCAAA
ATATAGCCAGAAGGCGATTGGGTTGAAGAACACAAAAATTGTCGTCAAGTCATTCGGGAAACTGACGGAAGTTTTTCAGG
ACCTGTTTGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-221)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385SFR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

50.655

100

0.508
  radA Streptococcus pneumoniae Rx1

50.655

100

0.508
  radA Streptococcus pneumoniae D39

50.655

100

0.508
  radA Streptococcus pneumoniae TIGR4

50.655

100

0.508
  radA Streptococcus mitis NCTC 12261

52.074

94.967

0.495
  radA Streptococcus mitis SK321

52.074

94.967

0.495
  radA Bacillus subtilis subsp. subtilis str. 168

52.459

93.435

0.49

Multiple sequence alignment