Detailed information NTG0315216

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: D4A37_RS27020
• Genome accession: NZ_CP032365
• Coordinates: 5137741..5139090 (-)
• Length: 449 a.a.
• NCBI ID: WP_000879433.1
• Uniprot ID: -
• Organism: Bacillus wiedmannii strain SR52
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5132741..5144090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4A37_RS27000	secA	5133070..5135577 (-)	2508	WP_000579394.1	preprotein translocase subunit SecA	-
D4A37_RS27005	raiA	5135852..5136394 (-)	543	WP_000671193.1	ribosome-associated translation inhibitor RaiA	-
D4A37_RS27010	cspC	5136713..5136910 (-)	198	WP_001990088.1	cold shock protein CspC	-
D4A37_RS27015	-	5137037..5137741 (-)	705	WP_151035633.1	ComF family protein	-
D4A37_RS27020	comFA	5137741..5139090 (-)	1350	WP_000879433.1	ATP-dependent helicase ComFA	Machinery gene
D4A37_RS27025	-	5139218..5140546 (-)	1329	WP_000734335.1	C40 family peptidase	-
D4A37_RS27030	-	5140798..5141112 (-)	315	WP_000400858.1	helix-turn-helix domain-containing protein	-
D4A37_RS27035	-	5141285..5142127 (-)	843	WP_000844776.1	DegV family protein	-
D4A37_RS27040	-	5142367..5143002 (+)	636	WP_000926677.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51098.02 Da
• Isoelectric Point: 9.8731

>NTDB_id=315216 D4A37_RS27020 WP_000879433.1 5137741..5139090(-) (comFA) [Bacillus wiedmannii strain SR52]
MLAGKQLLLEELSSDLRDTLQDLKKKREVVCVQGVKKKASKYMCQRCGNIEQRLFASFLCKKCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKGEKGLNPLQWNGTLSTGQELAAQGVIEAIKKKDSFFIWAVCGAGKTEMLFYGMEEALRKGERVCIAT
PRTDVVLELAPRLQEVFPHINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMVVDEIDAFPYYADQMLQYAVQQAM
KEKAARIYLTATPDEKWKHNFRSGKQKGIIVSGRYHRHPLPVPLFCWCGNWKKSLHHKRIPRVLLQWLKMYVSKKYPIFL
FVPHVRYIKELSLILKTLDPRIDGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHCGKTEAMVRAKRHIQSMNKKAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=315216 D4A37_RS27020 WP_000879433.1 5137741..5139090(-) (comFA) [Bacillus wiedmannii strain SR52]
ATGTTAGCAGGGAAACAGTTACTATTAGAGGAACTCTCTTCAGATTTACGGGATACATTACAAGATTTGAAAAAGAAGAG
GGAGGTCGTATGTGTACAAGGTGTAAAAAAGAAAGCTTCTAAATATATGTGTCAGCGCTGCGGAAATATCGAGCAGCGAC
TATTTGCGTCATTTTTATGTAAAAAGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTCGTTCGTGGGATCGCTGAAAGAAAAGGAGAAAAAGGTTTAAATCCGTTACAGTGGAACGGGACCTT
GTCTACTGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGAAGAAAGACTCTTTTTTTATTTGGGCTGTCT
GCGGGGCTGGAAAGACAGAAATGTTATTTTACGGTATGGAAGAGGCATTGCGAAAAGGAGAAAGGGTTTGTATCGCAACA
CCAAGAACAGATGTTGTACTAGAATTAGCACCGAGATTACAAGAAGTGTTTCCACATATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGACCGGGAAAAAGATGCAGCGTTAGTCGTTGCAACTACGCATCAATTGTTACGTTACTATCGAGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCCTTCCCGTATTATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGCGGCGCGTATTTATTTAACGGCAACTCCCGATGAAAAGTGGAAACATAATTTCAGAAGTGGTAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTTTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GTCTCCACCATAAAAGAATTCCTCGAGTGTTACTACAATGGTTAAAAATGTACGTAAGCAAAAAATATCCCATTTTTTTA
TTTGTTCCTCATGTGCGATATATAAAAGAATTGAGCCTGATATTGAAAACGTTGGATCCTAGAATCGATGGTGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTAGCAGCTTTCAGAAAGGGAGAAATTCCGTTATTAGTTACAACGACAATTTTAG
AGAGAGGAGTAACTGTGAAGAATTTACAAGTTGCGGTGTTAGGGGCGGAAGAAGAAATCTTTTCAGAAAGTGCGCTCGTA
CAAATTGCCGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTATGGCGAGGTCGTTTATTTTCATTGTGGTAAGACAGAGGC
GATGGTACGCGCGAAAAGGCATATTCAAAGTATGAACAAAAAGGCGAAAGAACAAGGATTAATCGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	49.095	98.441	0.483