Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D4A37_RS22535 Genome accession   NZ_CP032365
Coordinates   4322625..4323371 (-) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain SR52     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4317625..4328371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS22520 dnaG 4318395..4320191 (-) 1797 WP_000528234.1 DNA primase -
  D4A37_RS22525 - 4321043..4321855 (-) 813 WP_000368948.1 pyruvate, water dikinase regulatory protein -
  D4A37_RS22530 - 4321885..4322517 (-) 633 WP_000583754.1 helix-turn-helix transcriptional regulator -
  D4A37_RS22535 recO 4322625..4323371 (-) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  D4A37_RS22540 - 4323405..4323548 (-) 144 WP_000883924.1 YqzL family protein -
  D4A37_RS22545 era 4323725..4324630 (-) 906 WP_001080239.1 GTPase Era -
  D4A37_RS22550 - 4324623..4325021 (-) 399 WP_001086293.1 cytidine deaminase -
  D4A37_RS22555 - 4325122..4325475 (-) 354 WP_000715485.1 diacylglycerol kinase family protein -
  D4A37_RS22560 ybeY 4325472..4325942 (-) 471 WP_000054689.1 rRNA maturation RNase YbeY -
  D4A37_RS22565 - 4325939..4328083 (-) 2145 WP_000946271.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=315206 D4A37_RS22535 WP_000487012.1 4322625..4323371(-) (recO) [Bacillus wiedmannii strain SR52]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=315206 D4A37_RS22535 WP_000487012.1 4322625..4323371(-) (recO) [Bacillus wiedmannii strain SR52]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CCCATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCGGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAGTCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment