Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D4A37_RS20705 Genome accession   NZ_CP032365
Coordinates   4019815..4020273 (+) Length   152 a.a.
NCBI ID   WP_000804863.1    Uniprot ID   A0AAU8F824
Organism   Bacillus wiedmannii strain SR52     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4014815..4025273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS20685 - 4015477..4015713 (+) 237 WP_000283744.1 hypothetical protein -
  D4A37_RS20695 - 4015883..4017991 (-) 2109 WP_000425559.1 polyphosphate kinase -
  D4A37_RS20700 ppx 4018099..4019637 (-) 1539 WP_151035531.1 exopolyphosphatase -
  D4A37_RS20705 kre 4019815..4020273 (+) 459 WP_000804863.1 YkyB family protein Regulator
  D4A37_RS20710 - 4020305..4020967 (-) 663 WP_000922489.1 YkyA family protein -
  D4A37_RS20715 - 4021621..4022262 (-) 642 WP_000680839.1 diguanylate cyclase -
  D4A37_RS20720 - 4022426..4022659 (+) 234 WP_000939452.1 SPP1 phage holin family protein -
  D4A37_RS20725 - 4022691..4023191 (-) 501 WP_000708185.1 hypothetical protein -
  D4A37_RS20730 - 4023616..4025157 (+) 1542 WP_000445748.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17731.45 Da        Isoelectric Point: 10.6793

>NTDB_id=315201 D4A37_RS20705 WP_000804863.1 4019815..4020273(+) (kre) [Bacillus wiedmannii strain SR52]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGAEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=315201 D4A37_RS20705 WP_000804863.1 4019815..4020273(+) (kre) [Bacillus wiedmannii strain SR52]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTGCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment