Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D4A37_RS09920 Genome accession   NZ_CP032365
Coordinates   1945269..1945556 (+) Length   95 a.a.
NCBI ID   WP_000648283.1    Uniprot ID   A0A1G6PDZ3
Organism   Bacillus wiedmannii strain SR52     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940269..1950556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS09900 - 1941446..1941643 (+) 198 WP_001048106.1 DUF4083 domain-containing protein -
  D4A37_RS09905 - 1941674..1942135 (+) 462 WP_000035010.1 NUDIX hydrolase -
  D4A37_RS09910 nadE 1942183..1943001 (-) 819 WP_000174908.1 ammonia-dependent NAD(+) synthetase -
  D4A37_RS09915 - 1943272..1945152 (+) 1881 WP_151035406.1 ABC transporter permease -
  D4A37_RS09920 abrB 1945269..1945556 (+) 288 WP_000648283.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D4A37_RS09925 - 1945831..1946784 (+) 954 WP_001246218.1 serine protease -
  D4A37_RS09930 galT 1946998..1948490 (+) 1493 Protein_1858 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  D4A37_RS09935 - 1948774..1949082 (-) 309 WP_001259916.1 helix-turn-helix transcriptional regulator -
  D4A37_RS09940 - 1949190..1950125 (+) 936 WP_048566543.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10590.37 Da        Isoelectric Point: 6.9795

>NTDB_id=315195 D4A37_RS09920 WP_000648283.1 1945269..1945556(+) (abrB) [Bacillus wiedmannii strain SR52]
MKATGIIRKVDELGRIVIPKELREVLGIQIKSPLEIFVEADKVILQKYQPYNACQITGDVSDQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=315195 D4A37_RS09920 WP_000648283.1 1945269..1945556(+) (abrB) [Bacillus wiedmannii strain SR52]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAGTTACGAGAAGTATTAGG
GATCCAAATCAAATCACCACTTGAAATTTTCGTAGAAGCAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G6PDZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.667

94.737

0.537

Multiple sequence alignment